Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00427 ATGTCCTCGAGGGATTCTAACGTCCTCTTCAGTGGTGGCGGCATCAGTTTTCTCAATGAAAATCACACTGGAAAGTTCAGCTATGGATATTCTAGTTTCAAGGGCAAAAGAGCTTCAATGGAGGACTTCTATGAAACAAGAATTTCTGAAGTTGATGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCATCCAGACTTTATCAAAGACACAAAGACTGCTATTATTGAGGTCTTTAAACAGACTGATGCCGATTATATCAATGAAGAGAAAGGGCAGCAGAAAGATGCTGGGTCAACTGCATCAACTGCTGTCCTGTTGGGGGATCGTCTCCTTGTTGCAAATGTTGGGGATTCCAGAGTAGTTGCATCTAGAGCTGGTTCAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGGTCAGATGAGCGCCAAAGGATTGAGCAAGCGGGAGGATTCATTCTTTGGGCAGGAACTTGGCGGGTTGGTGGTATTCTAGCAGTTTCACGTGCCTTTGGAGATAAGCTACTCAAACCGTATGTTGTTGCTGATCCTGAAATTAAGGAAGAAGAACTTGAAGGTGTAGATTTTATTATTATTGCAAGCGATGGACTTTGGAATGTCATATCAAACGAGGAAGCTGTTGCATTGGTACAACACAACCAAGATGCAGAAATGGCATCAAGACAACTAATCCAAGAAGCTTTTGCTCGAGGGAGTTCCGACAACATTACATGTGTCATTGTACGGTTTGGTTTATCGTAA 828 42.87 MSSRDSNVLFSGGGISFLNENHTGKFSYGYSSFKGKRASMEDFYETRISEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPDFIKDTKTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSAIPLSIDHKPDRSDERQRIEQAGGFILWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIKEEELEGVDFIIIASDGLWNVISNEEAVALVQHNQDAEMASRQLIQEAFARGSSDNITCVIVRFGLS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5966702 5971364 + MELO3C008426.2.1 Cme03g00427 322438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00427 275 CDD PP2Cc 26 272 IPR001932 -
Cme03g00427 275 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 4 274 - -
Cme03g00427 275 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169
Cme03g00427 275 Pfam Protein phosphatase 2C 28 265 IPR001932 -
Cme03g00427 275 PANTHER ALPHABET, ISOFORM E-RELATED 4 274 - -
Cme03g00427 275 SMART PP2C_SIG_2 39 272 IPR001932 -
Cme03g00427 275 SUPERFAMILY PP2C-like 24 273 IPR036457 -
Cme03g00427 275 ProSiteProfiles PPM-type phosphatase domain profile. 27 272 IPR001932 -
Cme03g00427 275 SMART PP2C_4 17 270 IPR001932 -
Cme03g00427 275 Gene3D - 18 274 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00427 Cme-Chr3:5966702 Cme07g00150 Cme-Chr7:961248 6.90E-130 dispersed
Cme12g00139 Cme-Chr12:1356184 Cme03g00427 Cme-Chr3:5966702 1.05E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00427 K17506 - csv:101220053 537.339