Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00431 ATGGTTGGCAAAGAAAACTTGAGGACTGAAGATTTGAACTTGTGCTTTGAGAAACTAATGATGCTTGTTGGTGGTGATGGGATGGATGTTGGTGCTAGAGGAGTTAAAATGGATGGTGGGGTGATAGCAGGATGGAAAGATATTCCTATGGAGCTTCTGTTGCAAATTGTATCGCTTGTTGATGATCGAACTGTTATTGTAGCTTCAGGCGTGTGTCGTGGATGGAGGGATGCTATTTGCTTTGGCCTTATCCATCTTTCCCTCTCATGGTGCAAAAAGAACATGAACAACTTGGTCCTATCCCTTGCTCCTAAATTTGGGAAACTGCAAAATCTAATCTTGCGCCAAGATAAACCCCAGCTTTCCGACCATGCTGTTGAGACCATTGCTAGTTACTGTCATGATCTGCAGGTCCTGGACCTGAGCAAAAGTTTCAAGCTCAGTGATCTCTCGTTATATGCTCTGGCTCATGGTTGCCATGATCTTAAGAGACTTAATATTAGTGGTTGCACTGCATTCAGTGACACTGCACTGGCTTATCTGGCCAGTTATTGCAGAAAGCTAAAATTTCTTAATCTTTGTGGATGTGTCAAAGCTGCATCCGACACTGCATTGCAGGCTATCGGACAATACTGTAATCATTTGCAATCTGTAAATCTTGGGTGGTGTGAAAATGTGACTGATGTGGGTGTGATGAGTTTGGCGTATGGGTGTCCCGATCTTCGAACCCTAGACTTGTGTGGCTGTGTTCTAATTACAGATGATAGTGTGATTGCTTTGGCAAATATGTGTCCTCATCTGAGGTCCCTTGGCCTCTACTATTGTCAAAACATTACGGACAGAGCGATGTATTCTTTGGCACATAGCTGTATAAAGAACAAACCCACAAAATGGGGAACAGGGAAAGGCAAGAATGATGATGATGGTCTTCGAACTCTTAACATAAGCCAATGCACTGCTCTTACTCCCCCTGCTGTTCAAGCAGTCTGCGATTCATTTCCTGCTCTCCACACCTGCTCGGGTCGCCATTCTCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCACACCGTGCGTCAACTGCTTTTCCTCATTCAGCTCATTGA 1131 44.39 MVGKENLRTEDLNLCFEKLMMLVGGDGMDVGARGVKMDGGVIAGWKDIPMELLLQIVSLVDDRTVIVASGVCRGWRDAICFGLIHLSLSWCKKNMNNLVLSLAPKFGKLQNLILRQDKPQLSDHAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCHDLKRLNISGCTAFSDTALAYLASYCRKLKFLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWGTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRASTAFPHSAH 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5999698 6004572 - MELO3C008429.2.1 Cme03g00431 322442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00431 376 Pfam Leucine Rich repeat 211 235 IPR001611 GO:0005515
Cme03g00431 376 Pfam Leucine Rich repeat 238 261 IPR001611 GO:0005515
Cme03g00431 376 Pfam Leucine Rich repeat 264 287 IPR001611 GO:0005515
Cme03g00431 376 Gene3D Ribonuclease Inhibitor 80 369 IPR032675 -
Cme03g00431 376 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 358 - -
Cme03g00431 376 PANTHER UNCHARACTERIZED 1 358 - -
Cme03g00431 376 Pfam F-box domain 45 80 IPR001810 GO:0005515
Cme03g00431 376 Gene3D - 44 79 - -
Cme03g00431 376 SUPERFAMILY RNI-like 79 335 - -
Cme03g00431 376 SUPERFAMILY F-box domain 45 89 IPR036047 GO:0005515
Cme03g00431 376 SMART LRR_CC_2 212 237 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 80 105 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 310 332 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 238 263 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 185 211 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 133 158 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 264 289 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 159 184 IPR006553 -
Cme03g00431 376 SMART LRR_CC_2 106 132 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00431 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - csv:101220292 731.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00431 Cme-Chr3:5999698 Cme10g00782 Cme-Chr10:5064277 1.16E-21 dispersed
Cme11g00339 Cme-Chr11:3530267 Cme03g00431 Cme-Chr3:5999698 1.66E-06 dispersed
Cme03g00431 Cme-Chr3:5999698 Cme04g00407 Cme-Chr4:3233873 2.03E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00431 Cme_Chr03 FPKM 2.24031 3.290509 1.78573 1.85584 2.703202 3.576639 2.241615 0.0 0.05864 0.0