Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00434 ATGGAGACTCCTCTTACTTCGTCTCGCATTATCATTGCTTATGATGCTACTAAGGATCGCACTGAACACGAGCTTCAGCTTACTCTGAGGAACTTGTGGATGAGAGGCGACATCCTTCGTGGAGGCGATACGCTTATTGTGCTTGGAATTCTTCATAAAGTGCCTCATCCGTTGGGTTACCAATTGAAAGCTTGTCCCGACTCGATTTTTGGAACCAGCGTTCGTGCAATGGAGGAAGAAGTTTCAAAGAAAGCAGATGCATATATTGCCATGCTTCAGCAAAGTGCAGAGACGTGTGAAGAAGGAGGGGTCAGCATTGAAGTCAGAATTACTGCTGGTTTCCCCATAAAGAATGTTATTCTACAAGAAATCGTGGTCTTTAGCGCGAGCTGGGTTATACTCGATAGGCATCTTAGACGGGATGAGAGATTTTACCTTAAACATTTATCTTCCAAAGTTGCTGCAATCCAAGATAACTTGTCTGTTAGAGTTTTGAGAAATAAGACTACAACTGTGGCAAATGAACAGAATTTGAGGGATAGTGAAAAGTCCATTCTCTCTATCAAAAGTTTCTCATTCCAAAGTAGTTCTCAGGATAGCTCATCATCACAGAGCAACTGGACCAGTTCGTCCAGTAGCATATCTAGAGACCTTACATCGGATGCTGAGTCATCTTTTCAGCAAGAAAAAATAGGTACAGATTCCAGAGAACAGAAAGTTTATGCAACTGCTTCTCAGACTGTTCAACTTCCAAATAAGGACATCTTTCAACAGAAATCTTCAGAAGCACCAATTTTATGTTCTGTTTGTGGAATGAGGTCTGATTTGCATATGAAGGATACCATGAGGTTTAGCTTTTCTGAAATTCAGCAAGCAACTTCCGATTTCTCAGCAGCAAACTTGTTAGGAGAAGGTGGTTATGGTCATGTTTTTAAGGGTGAACTAAAAAATGGACAACTCATTGCTGCAAAAGTGCGAAAAGAAAAAAGTAGCCAAGGATTTATAGAATTTCATTCCGAGATACAAGTTTTGAGTTTTGCTCGTCACAAGAATATAGTGATGTTGTTGGGTTATAGTTTCAAGGAAAATTTAAATGTTCTGGTCTATGAATATATTTGCAACAGGTCTCTTGATTTTCACTTATTTGGTAAAACGACTACAGTTCTTGAACTACATCAAAGATATGGCATTGCTGTTGGAATTGCCAAGGGACTGCGTTTTCTTCATGAAGAATGTCGTGGAGGTCCTGTAATACACAGAGATGTCCGTCCAAGTAACATATTGCTCACACATGATTTTGTTCCTATGTTGGGTGATTTTGGCTTGGCCAAATGGAGGGCAAAAGATGAAACATTGCGTACAAGGATACTCGGCACATTTGGATATGTTGCACCCGAATATGCGGAAAACGGTATTCTTTCAGTAAGAACGGATGTATATGCATTTGGAATTGTATTGCTACAATTGATATCTGGTCGCAAGGTGTTTGACGCTAAGAATGATATACAAGGACAATCTCTTCGAGAATGGGCTGAACCATTAATTGAGAACTTAGCATTACATGAACTGATTGATGCTCGAGTTGCAAAGACATATGACACATATGAATTGTATCTCATGGCCAGAACTGCATACTTATGCGTCCAAAGAAGCCCTGAGAACCGTCCATCAATGGGAGAGGTTGTGCGCCTTCTTGAAGGGGAAAATGATCATTTTCACTATTTGGGAGAGAAGTTGATACCTCATTATAACAAATAA 1758 39.99 METPLTSSRIIIAYDATKDRTEHELQLTLRNLWMRGDILRGGDTLIVLGILHKVPHPLGYQLKACPDSIFGTSVRAMEEEVSKKADAYIAMLQQSAETCEEGGVSIEVRITAGFPIKNVILQEIVVFSASWVILDRHLRRDERFYLKHLSSKVAAIQDNLSVRVLRNKTTTVANEQNLRDSEKSILSIKSFSFQSSSQDSSSSQSNWTSSSSSISRDLTSDAESSFQQEKIGTDSREQKVYATASQTVQLPNKDIFQQKSSEAPILCSVCGMRSDLHMKDTMRFSFSEIQQATSDFSAANLLGEGGYGHVFKGELKNGQLIAAKVRKEKSSQGFIEFHSEIQVLSFARHKNIVMLLGYSFKENLNVLVYEYICNRSLDFHLFGKTTTVLELHQRYGIAVGIAKGLRFLHEECRGGPVIHRDVRPSNILLTHDFVPMLGDFGLAKWRAKDETLRTRILGTFGYVAPEYAENGILSVRTDVYAFGIVLLQLISGRKVFDAKNDIQGQSLREWAEPLIENLALHELIDARVAKTYDTYELYLMARTAYLCVQRSPENRPSMGEVVRLLEGENDHFHYLGEKLIPHYNK 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6082409 6089192 - MELO3C008431.2.1 Cme03g00434 322445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00434 585 Gene3D Transferase(Phosphotransferase) domain 1 373 575 - -
Cme03g00434 585 SMART tyrkin_6 296 565 IPR020635 GO:0004713|GO:0006468
Cme03g00434 585 Gene3D Phosphorylase Kinase; domain 1 270 371 - -
Cme03g00434 585 ProSiteProfiles Protein kinase domain profile. 296 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00434 585 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Cme03g00434 585 PANTHER RECEPTOR-LIKE KINASE 8 577 - -
Cme03g00434 585 SUPERFAMILY Protein kinase-like (PK-like) 281 567 IPR011009 -
Cme03g00434 585 PANTHER OS01G0253100 PROTEIN 8 577 IPR045271 GO:0004714|GO:0006468
Cme03g00434 585 MobiDBLite consensus disorder prediction 195 233 - -
Cme03g00434 585 Pfam Protein kinase domain 299 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00434 585 ProSitePatterns Tyrosine protein kinases specific active-site signature. 417 429 IPR008266 GO:0004672|GO:0006468
Cme03g00434 585 MobiDBLite consensus disorder prediction 195 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00434 - - - mcha:111011855 963.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00434 Cme-Chr3:6082409 Cme04g00634 Cme-Chr4:6199318 1.87E-88 dispersed
Cme03g00434 Cme-Chr3:6082409 Cme04g01192 Cme-Chr4:16312530 1.16E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64726 PF00069 Pkinase 8.70E-38 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00434 Cme_Chr03 FPKM 17.768202 17.413992 24.494617 23.093748 24.834406 19.749006 23.990286 31.413568 28.699926 34.532059