Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00439 ATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCAACAAATGATGTACTTATCGCTCCTGATTGGGCCATAAATATTGAGCTCTGTGATATTATTAACATGGATCCTAGGCAAGCGAAAGATGCATTGAAGATACTCAAGAAGCGTCTCACGAGCAAAAATCCTAAAATACAACTTCTAGCGCTCTATGCATTGGAGGCTCTGAGCAAAAATTGTGGCGATACTGTTTTTAAGCTGATTGTAGATCGTAATATCCTGCATGAAATGGTTAAAATTGTAAAGAAGAAGCCTGACTCAACCGTACGGGAAAAAATATTAGCCTTGGTAGATGCATGGCAAGCAGCATTTGGTGGTGGTTCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGACTTGAAGAATGCTGGATTTCAATTTCCACCAAGAGAAGAGAACGTTGAGCAATTCTTTAGTCCACCTCAGACACAGCCAGTCATTGAAGACCCTGTTTCAGCTTATGATGATCTTGCTGTTCAGGCTTCTCTCCAGTCTGATTCCTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTGGGAGATGTTTTACTGGAAATGCTTGGTGCGTTGGACCCCAAGACTCCAGAGGCTTTGAAGCAAGAAGTGATTGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTTGTGATTCTTGTAAACGAGACGACAGACGAGGAATTGCTATGTCAAGGATTGGTATTGAACGACAGTCTGCAGCGTGTACTCAGCTACCATGACGAAATTGCGAAAGGAACATTTACGACGGAAGCTAGAAGAGCAGAACCTCCCGTTCCATCGGTTCCGTATATCAACCCTGAGGATGATGAGTCCGAAGATGACTTTACACCGTTATCTCGCAGGCCAACGAGGGATCACATTTATGAGAGGGACAGGAAATTGGCAAACGGCCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCAAAGAAGACGGCTAGTGTGGAAATGATTGATCATCTTAGCGGTGATGTGTACAAGCCTGAAGGGTCTCCAAAGATAGTAGACCCACCATCAACTTCTTCTTCGCCTTTCTACACTAGACAACCTTTGTTTGACGAACCACCTCCAAGAAGCATGCCCACCGATCCACTCCTCACAACACCTCGGGATGCTCAATCTCCTAGCGGCCTCCCTCCCCCACCCTCCCGATATAATCAAAGACAACAATATTTTGAGCAACAAAAAGCTTTTACAGGAGGCGGTCAGCCCCATTTGAGCAACGATTATAGGTCTTATGACAACATAGTGGGGAATACCAAGATTCTTTCACTCAGTCCTACCGCAACCAGATCCGCGGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGACTTTGCCAAGGCCAAATCATCTTCCTCGAAATCCAACCGACCATTCTGA 1458 45.47 MSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLTSKNPKIQLLALYALEALSKNCGDTVFKLIVDRNILHEMVKIVKKKPDSTVREKILALVDAWQAAFGGGSKGKYPQYYAAYNDLKNAGFQFPPREENVEQFFSPPQTQPVIEDPVSAYDDLAVQASLQSDSSGLSLPEIQNAQGLGDVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDEIAKGTFTTEARRAEPPVPSVPYINPEDDESEDDFTPLSRRPTRDHIYERDRKLANGQSSRVSPLPSPSSKKTASVEMIDHLSGDVYKPEGSPKIVDPPSTSSSPFYTRQPLFDEPPPRSMPTDPLLTTPRDAQSPSGLPPPPSRYNQRQQYFEQQKAFTGGGQPHLSNDYRSYDNIVGNTKILSLSPTATRSAEHEEALFKDLVDFAKAKSSSSKSNRPF 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6142765 6146232 + MELO3C008434.2.1 Cme03g00439 322450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00439 485 PANTHER TOM1-LIKE PROTEIN 1 484 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cme03g00439 485 Gene3D - 2 159 IPR008942 -
Cme03g00439 485 MobiDBLite consensus disorder prediction 272 413 - -
Cme03g00439 485 SMART VHS_2 5 138 IPR002014 GO:0035091|GO:0043130
Cme03g00439 485 PIRSF TOM1 1 484 IPR014645 -
Cme03g00439 485 SUPERFAMILY ENTH/VHS domain 8 143 IPR008942 -
Cme03g00439 485 CDD GAT_GGA_like_plant 188 266 - -
Cme03g00439 485 Pfam VHS domain 9 138 IPR002014 GO:0035091|GO:0043130
Cme03g00439 485 Pfam GAT domain 197 269 IPR004152 GO:0035091|GO:0043130
Cme03g00439 485 PANTHER TOM1-LIKE PROTEIN 4 1 484 - -
Cme03g00439 485 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Cme03g00439 485 ProSiteProfiles VHS domain profile. 12 142 IPR002014 GO:0035091|GO:0043130
Cme03g00439 485 MobiDBLite consensus disorder prediction 298 320 - -
Cme03g00439 485 SUPERFAMILY GAT-like domain 152 269 - -
Cme03g00439 485 MobiDBLite consensus disorder prediction 321 340 - -
Cme03g00439 485 CDD VHS 10 136 - -
Cme03g00439 485 Gene3D - 177 275 IPR038425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00439 - - - csv:101219096 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01137 Cme-Chr1:14616353 Cme03g00439 Cme-Chr3:6142765 0 dispersed
Cme03g00439 Cme-Chr3:6142765 Cme04g00167 Cme-Chr4:1262436 3.54E-85 dispersed
Cme03g00439 Cme-Chr3:6142765 Cme03g01731 Cme-Chr3:25899216 8.00E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
Vvi18g1130 Blo01g01603 Blo12g01115 Bda01g00478 . . . . . Cmo05g00314 Cmo12g00355 Cma01g01018 . Car01g00899 Car12g00381 Sed11g1094 . Cpe07g00360 Bhi04g00141 Tan02g2081 Cmetu03g1137 . Hepe10g0160 . Lcy13g1907 Cla08g01417 Cam08g1895 Cec08g1473 Cco08g1606 Clacu08g1588 . Cre08g1372 Cone4ag1978 . Cone17ag1410 Cone20ag0072 . . Chy04g00409 Cme03g00439 . Blo18g00229 . Bda13g01547 . . . Bma02g00291 . Cmo01g01060 . Cma12g00404 Cma05g00312 Car05g00808 Car09g00086 Cpe11g00260 Cpe02g00066 . . . . . . . . . . . . . . Lsi08g00283 Csa02g02140 Chy03g01379 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00439 Cme_Chr03 FPKM 25.779715 34.159214 21.922033 22.640406 29.044714 26.929804 28.51082 2.029106 2.760075 2.425063