Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00440 GCTGTTAGGATATTGGTTCCTCCAGCAAGATTTGAAGCTTCCAAGTTAAAAGTTGTGTTCAGTAGAGAAGTGACAAAGTCTGCAGGAATTATCCCGAGAACATATATTCTATCACATTGTGACTTTACTGCTAATCTCACCTTAACCATCTCTGACGTTATCAACCTTGATCAGTTGAGAGGGTGGTATAACAAGGACGATGTGGTTGCTGAGTGGAAGAAAGTAAAGGATGAAATGTATCTTCATGTGCATTGCTATGTGAGCGGTCCGAGTTCTTTGCTCGACGTTGCTGCAGAGTTTAGATACCACATATTCTCCAAAGAATTGCCTCTTGTGCTTGAATCTGTTCTGTATGGAGATTCAATTCTGTTTGGGGAGAACCCTGAGCTCCTAGATTCCTTGGTCAGAGTATATTTTCATTCTAGTTCACCAAAATACAATCGACTCGAATGCTGGGGGCCACTCAAGGATGCTGTACTGGTAAACTTGATAACATGTTAA 501 41.32 AVRILVPPARFEASKLKVVFSREVTKSAGIIPRTYILSHCDFTANLTLTISDVINLDQLRGWYNKDDVVAEWKKVKDEMYLHVHCYVSGPSSLLDVAAEFRYHIFSKELPLVLESVLYGDSILFGENPELLDSLVRVYFHSSSPKYNRLECWGPLKDAVLVNLITC 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6148908 6150305 - MELO3C008435.2.1 Cme03g00440 322451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00440 166 PANTHER PROTEIN STAY-GREEN LIKE, CHLOROPLASTIC 1 159 - -
Cme03g00440 166 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 1 159 - -
Cme03g00440 166 Pfam Staygreen protein 10 158 IPR024438 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00440 K22013 SGR, SGRL; magnesium dechelatase [EC:4.99.1.10] - csv:101219336 322.783
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00440 Cme-Chr3:6148908 Cme09g01705 Cme-Chr9:21683430 6.42E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g187 Blo01g01313 . Bda01g00683 . Bpe02g00622 . . Bma01g02097 Cmo04g02523 Cmo15g00651 . . . . Sed01g0943 . . Bhi04g01844 Tan11g1216 Cmetu09g0061 . Hepe02g2741 . Lcy10g1292 Cla08g00644 Cam08g1066 Cec08g0651 Cco08g0762 Clacu08g0772 . Cre08g0580 . . . Cone20ag0416 . . . Cme03g00440 . . . . . . . . . . . . . Car04g02320 Car15g00589 Cpe01g02086 . . . . . . . . . . . . . . . Lsi08g00503 . Chy03g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008497 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00440 Cme_Chr03 FPKM 8.140711 9.670309 29.417969 23.897799 11.882931 13.498417 11.167812 9.08937 10.054355 10.304417