Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00441 ATGAAAATTCAAGCAGAGGACCTTATGAAGCTCATAATTCTGTTATCAGGAACTTTGGCTGCAGCGGTGGAGGTGGCGAAGGTATTAACGGGCTGCGACGAACACTGTGGGAACTTGAGAATTCCATATCCGTTTGGGATAAAGAAACGGTGTTATCTCGACCAAGCATTCTCCATCACTTGCAACAAAACTTATCATCCACCAAAACCATTTCTACAAGATTCCAACATAGAGATCACCAATATATCCATAATCCAAGGCCAGCTCCACATCAAGCAATTCGTCGCAAGAGATTGCTACACAAAAAATGGTCCAAGTGAATCCAACACTAGACCCTTTCTTCTGCTCAACAAGTTCAGAATTTCCAACACCGACAACAAGTTTATTGTTATTGGCTGTGATACTTACGCTTATATTTATGGTGAAATTGAAGGGGAATCCTACAAAAGTGGGTGCATGGCTTTGTGTGGAAACAATAATACTAAAATTATAAAAGATGGGTCTTGCTCTGGGAATGGATGCTGTCAATTGCAGATTCCTAAAGGCTTGAAAATTTTGGAGTTGGAGGTGAGAAGTTTCGACAATCATAGTGAGGTTCTCAAGTTTAATCCATGTGGATATGCTTTTGTAATTCAACAAGATAAATTCACTTTCTCCAAGAAATATATTTACAATTTTACACAAGAGGAAGTTCCATTGGTGCTTGATTGGGGAATTCCAACTAATACTTCTTGCTCAAAGGGTGAGAATAAAGGAAATTGCAGTATATGTGGACTAAATGCTGAAAGGATAAGATTTCTTGATGATGGATCTGAATATCGTTGCCAGTGTTTGGAAGGGTTTGAAGGAAATCCATATCTCCCTCAGGGTTGCCAAGATATAGATGAATGCAAGAATGGAAGCCATAAATGTAAATACAAAGACTTGTGTTTTAACACACCAGGAAACTATACTTGTCATTGTCCTAAGAACCATAAAGGAGATGGCAAATATGGAGGAGAAGGTTGTACTCCAAACTTCATGTCTTCAATTCATATCATCATCGGAACCTCTGTGGGGTTGGCAGTTTTAGTGATTGGCGGTATATGGTTATACTTGGGTTACAGAAGGTGGAAATTTATCCAACAAAAGGAGAAGTTTTTTAAAAGAAATGGAGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAATCACCGGACATGCTCAAAATTTTCACACGAGAAGAGTTGGAGAAAGCTACAAACAAGTACGACGAAAGCGCAGTGGTCGGCAAGGGTGGTTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCAACAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTAACCAATTCATTAACGAAGTCATTATTCTGTCTCAAATCAACCATCGCAACGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCATAACCAACGGCACACTCTCCGAACACATCCACAGCAAAACCAACCAAGTTCGTCTTCCATGGGCAACTCGCTTGAAAATAGCTTCGGAAATTGCCAGCGTCCTTTCATATTTGCATTATTCAGCTTCTACTCCAATTATCCATAGAGACATCAAATCTAACAATATACTTTTAGACCAAAACTACACGGCAAAAGTCTCTGATTTCGGAACGTCAAAACTTGTTCCGTTGGATCGAACTCAAATATCCACAATGGTGCAAGGGACTATTGGATATTTGGATCCAGAATATTTCTTGACGAGTGAGTTGACGGAGAAAAGCGATGTGTATAGTTTTGGAATTGTACTGCTAGAGCTTATAACTGGGAAGAAGGCGGTGTGTTTTGATGGCCCGGAAGAAGAGAGGAGTCTTGCAATGTATGTACTGTGTGCAATGGAAGAAGATCGTGTGGAAGAAGTTATGGAAAAGGGAATGGCAACAGAAGAAAACTTCGAGGAAATAAAAAAAGTGGTTGAGTTAGGAAGAAAGTGTTTGAGAGTAAAAAGAGATGAGCGACCCAGCATGAAGGAAGTTGCTATGGAGTTGGAGGGATTGACACAGATTCAGCATATTGAATTCCGTTCATGGAGTGGTAGAAACAATTTTTTGTTAGATGGAGCTTCAAACACAACCCAAGTTGTTACCACTGATACTGACGAGAGCATGAAGGCTGAGGATCTAACATTTGTCAACGATGGAAGATGA 2220 39.95 MKIQAEDLMKLIILLSGTLAAAVEVAKVLTGCDEHCGNLRIPYPFGIKKRCYLDQAFSITCNKTYHPPKPFLQDSNIEITNISIIQGQLHIKQFVARDCYTKNGPSESNTRPFLLLNKFRISNTDNKFIVIGCDTYAYIYGEIEGESYKSGCMALCGNNNTKIIKDGSCSGNGCCQLQIPKGLKILELEVRSFDNHSEVLKFNPCGYAFVIQQDKFTFSKKYIYNFTQEEVPLVLDWGIPTNTSCSKGENKGNCSICGLNAERIRFLDDGSEYRCQCLEGFEGNPYLPQGCQDIDECKNGSHKCKYKDLCFNTPGNYTCHCPKNHKGDGKYGGEGCTPNFMSSIHIIIGTSVGLAVLVIGGIWLYLGYRRWKFIQQKEKFFKRNGGLMLQQHLSQWQSPDMLKIFTREELEKATNKYDESAVVGKGGYGTVYKGVLDDGSTVAIKKSKLVNQSQTNQFINEVIILSQINHRNVVKLIGCCLETKVPLLVYEFITNGTLSEHIHSKTNQVRLPWATRLKIASEIASVLSYLHYSASTPIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDRTQISTMVQGTIGYLDPEYFLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEEERSLAMYVLCAMEEDRVEEVMEKGMATEENFEEIKKVVELGRKCLRVKRDERPSMKEVAMELEGLTQIQHIEFRSWSGRNNFLLDGASNTTQVVTTDTDESMKAEDLTFVNDGR 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6173057 6176514 - MELO3C008436.2.1 Cme03g00441 322452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00441 739 SMART egfca_6 293 337 IPR001881 GO:0005509
Cme03g00441 739 ProSiteProfiles Protein kinase domain profile. 417 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00441 739 Gene3D Transferase(Phosphotransferase) domain 1 493 708 - -
Cme03g00441 739 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Cme03g00441 739 SUPERFAMILY Protein kinase-like (PK-like) 394 687 IPR011009 -
Cme03g00441 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Cme03g00441 739 Pfam Wall-associated receptor kinase galacturonan-binding 32 91 IPR025287 GO:0030247
Cme03g00441 739 CDD STKc_IRAK 423 690 - -
Cme03g00441 739 ProSiteProfiles EGF-like domain profile. 293 337 IPR000742 -
Cme03g00441 739 Pfam Protein tyrosine and serine/threonine kinase 422 687 IPR001245 GO:0004672|GO:0006468
Cme03g00441 739 ProSitePatterns Calcium-binding EGF-like domain signature. 293 319 IPR018097 GO:0005509
Cme03g00441 739 Pfam Calcium-binding EGF domain 293 326 IPR001881 GO:0005509
Cme03g00441 739 SUPERFAMILY EGF/Laminin 289 326 - -
Cme03g00441 739 Gene3D Phosphorylase Kinase; domain 1 389 492 - -
Cme03g00441 739 Gene3D Laminin 242 333 - -
Cme03g00441 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 693 IPR045274 GO:0007166
Cme03g00441 739 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524
Cme03g00441 739 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 14 693 - -
Cme03g00441 739 SMART serkin_6 417 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00441 Cme-Chr3:6173057 Cme03g00453 Cme-Chr3:6463423 0 dispersed
Cme03g00460 Cme-Chr3:6532804 Cme03g00441 Cme-Chr3:6173057 7.21E-88 dispersed
Cme03g00441 Cme-Chr3:6173057 Cme03g00445 Cme-Chr3:6266225 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64727 PF07714 PK_Tyr_Ser-Thr 5.30E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00441 - - cmos:111461403 947.192