Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00445 TGTGGGTATTCCAGTGAGGCAAAGGAAGGTGAGAAAAAAAAAAAAAAAACTTTGGTTCTTGCTTCTTCCTTGTGTAGTAGCTGCTTTTATTTGTTACAGATAATGATTTACGTATGGGATCACTTCCAACAAATAAGCTTTGTTCTACTCATCATGTTGTTGTCCGTGGCGGCATCACCGGACTGCGACCAACCACAGTACTGTGGTAACTTGGAAATTCCATATCCATTTAGTACGAAGGAAGAGTGTTATCTGAACGACATTTTCTTAATCACCTGCAATAGAACTCACTATAATCCTCCAAAGGCATTTATCGGCGATGGCAACGTTGATGTAACCAATATATCAATCAACAACAGCGAGCTCCACATCTCGCTTTTTGTAGCCAAAGATTGCTACTCAAGAAATGGTTCCCAGAGTGGCAGTCACAACGTGGTCACACTAGACACGCCTTTATTCACCATTTCCAACACCAAGAACAAGTTCATCGCGATTGGCTGCGATACTAAAGCTCTTATTTCTGGAAAAATCGAGGATGAATTGTATGAAGGTGGGTGCATGGCGTTGTGTGGAAACAGTAATAAAACTATAAGAGACGGACACTGCGCCGGGAATGGATGCTGTGAGTTGGAGATTCCAGAAGGCCTCAAATATTTGAAGTTGGAGGTTAATAGCTTCAAGAACCACACAGAGGTATTTGAATTCAATCCATGTGGGTATGGTTTTGTAATCAAACAAGACCAATTCCATTTCTCCTCCAAATACATTTCTAACTATGCACGACGTGAAGTTCCTTTGGTGCTTGATTGGGCCATCCCAAATGGTACTTGTTCTAAATCAAATAACAAAACCGATTGCAATAATATATGTGGACAAAATACCCAAAAGATTAGCTTTGTCAATGATTATCGTTGCCAATGTTTGCATGGTTTCACTGGAAATCCATATCTCCCTCAAGGTTGTCAAGATGTAAACGAATGCGATGATAAAATGTTGAATGAATGTGAATATAAGCACTTGTGTATCAACACACCTGGAAGATATACATGCCGTTGTCCTAAAAATTATAAAGTAGATGGAAGAAGCAATGGTAAAGGATGCATCCCAACCTATAAGGCCTTCGTTAAATACATCGTCGGATGTACGGTAGGGTTAACAATTTTAGTTATTGGGTGCACATTGTTATGTTTGAGTTATGCAAAGTGGAAGGCCAACCACGAAAAGAACAAATTTTTCAAGAGAAATGGAGGCTTAGTTCTTGAAGAACATCTTTCTAAGTGGGAATCACCAGTGGAGATGTTCAAAATCTTCACCCATGAAGAATTGAAGAAGGGTACAAACAAGTTCCATGAAAGCGCAGTGGTGGGAAAAGGTGGTTTTGGCACTGTTTACAAGGGTGTCTTAGAGGATGGTTTGATAGTCGCAATCAAAAAATCAAAATTAGTGGATCAATCACAAACTGATCAATTTATTAACGAAGTCATTGTTTTGTCCCAAATTAACCATCGCAACGTCGTCAAGCTACTGGGGTGTTGTTTGGAGACAAAAGTTCCGTTGTTAGTCTACGAGTTTGTAACCAATGGGACTCTCTTTGAGCACATCCACAACAAAACTAAGCATGCCCCTCTTTCTTGGGAAATTCGATTGAAGATAGCTTCAGAAATTGCGAGCGTCCTTGCGTATCTACATTCTTCGACTTCTACTCCCATCATCCATAGAGATATAAAATCTTCTAATGTGCTTTTAGACCATGATTATACTGCAAAGCTATCTGATTTTGGAGCTTCAAAGCTAGTTCCGTTGGATCATACTCGGCTATCTACAATGGTGCAAGGCACTCTGGGATATTTGGACCCTGAATACTTGTTGACAAGTGAGTTGACTGAGAAAAGTGACGTGTACAGCTTTGGAATTTTGCTTTTTGAGCTTATAACGGGAAAGAAGGCGGTGCGTTTTGATGTGCCTGAAGAAGAAAGAATTCTAGCCAAAATAGTCCTGTGTGCGATGAATGAAGATCATTTTGAAGAAATTGTTGAGGAGGGATTAGCAACAGAAGCGACTATCGAGGAGATAAAAAAGGTGGCAAAGCTTGCAAAAGAGTGTGTTAAAGTAAAAGGGGAGGAGCGCCCCACTATGAAGGAGGTGGCCATGGAGTTGGAGGGGTTGCAAATGTTGCATGATTGA 2184 40.38 CGYSSEAKEGEKKKKKTLVLASSLCSSCFYLLQIMIYVWDHFQQISFVLLIMLLSVAASPDCDQPQYCGNLEIPYPFSTKEECYLNDIFLITCNRTHYNPPKAFIGDGNVDVTNISINNSELHISLFVAKDCYSRNGSQSGSHNVVTLDTPLFTISNTKNKFIAIGCDTKALISGKIEDELYEGGCMALCGNSNKTIRDGHCAGNGCCELEIPEGLKYLKLEVNSFKNHTEVFEFNPCGYGFVIKQDQFHFSSKYISNYARREVPLVLDWAIPNGTCSKSNNKTDCNNICGQNTQKISFVNDYRCQCLHGFTGNPYLPQGCQDVNECDDKMLNECEYKHLCINTPGRYTCRCPKNYKVDGRSNGKGCIPTYKAFVKYIVGCTVGLTILVIGCTLLCLSYAKWKANHEKNKFFKRNGGLVLEEHLSKWESPVEMFKIFTHEELKKGTNKFHESAVVGKGGFGTVYKGVLEDGLIVAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVKLLGCCLETKVPLLVYEFVTNGTLFEHIHNKTKHAPLSWEIRLKIASEIASVLAYLHSSTSTPIIHRDIKSSNVLLDHDYTAKLSDFGASKLVPLDHTRLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGILLFELITGKKAVRFDVPEEERILAKIVLCAMNEDHFEEIVEEGLATEATIEEIKKVAKLAKECVKVKGEERPTMKEVAMELEGLQMLHD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6266225 6269689 + MELO3C008440.2.1 Cme03g00445 322456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00445 727 Gene3D Laminin 276 362 - -
Cme03g00445 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Cme03g00445 727 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 49 725 IPR045274 GO:0007166
Cme03g00445 727 ProSitePatterns Calcium-binding EGF-like domain signature. 323 350 IPR018097 GO:0005509
Cme03g00445 727 Pfam Wall-associated receptor kinase galacturonan-binding 62 124 IPR025287 GO:0030247
Cme03g00445 727 Pfam Calcium-binding EGF domain 323 360 IPR001881 GO:0005509
Cme03g00445 727 SUPERFAMILY EGF/Laminin 321 370 - -
Cme03g00445 727 ProSiteProfiles EGF-like domain profile. 323 362 IPR000742 -
Cme03g00445 727 SUPERFAMILY Protein kinase-like (PK-like) 429 720 IPR011009 -
Cme03g00445 727 Pfam Protein kinase domain 449 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00445 727 ProSitePatterns Protein kinases ATP-binding region signature. 455 478 IPR017441 GO:0005524
Cme03g00445 727 ProSiteProfiles Protein kinase domain profile. 449 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00445 727 SMART egfca_6 323 368 IPR001881 GO:0005509
Cme03g00445 727 SMART egfca_6 282 322 IPR001881 GO:0005509
Cme03g00445 727 Gene3D Transferase(Phosphotransferase) domain 1 525 726 - -
Cme03g00445 727 PIRSF SRK 369 727 IPR024171 GO:0004674
Cme03g00445 727 PIRSF SRK 14 84 IPR024171 GO:0004674
Cme03g00445 727 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 341 352 IPR000152 -
Cme03g00445 727 Gene3D Phosphorylase Kinase; domain 1 421 524 - -
Cme03g00445 727 CDD STKc_IRAK 455 722 - -
Cme03g00445 727 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 49 725 - -
Cme03g00445 727 SMART serkin_6 449 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00445 727 SMART egf_5 326 368 IPR000742 -
Cme03g00445 727 SMART egf_5 276 322 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00445 Cme-Chr3:6266225 Cme03g00453 Cme-Chr3:6463423 0 dispersed
Cme03g00441 Cme-Chr3:6173057 Cme03g00445 Cme-Chr3:6266225 0 proximal
Cme03g00445 Cme-Chr3:6266225 Cme03g00447 Cme-Chr3:6307187 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64728 PF00069 Pkinase 3.10E-50 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00445 - - cmos:111461403 887.871