Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00447 ATGGGACGTCCAACCGCCAAGAAGCTTGTGCGACTCATCATGGCCATCGTGGTTAACATAGCCATCTTTTTAGCAGCGACTGCGTCGTCGTCAGTACCTCCTCAAGTCAAATTCAAGTGCAAAAGTAAGTGTGGGAACTTGGAAATTCCATATCCATTCGGGATAACCGAAAAATGTTATCTCAACATTAATTTCTCAATCGAATGCCGCCCACAAGAAGATCGTGAAATCCCATTCCTAATGAACAGCAACATTAAAGTAACTAATATATCGCTGCATGGGGAGATCCACGTCTTGAACTACGTAGCCCGAGCTTGCTCCAAAAGCGATGGCTCTCTTTATTCCAACAAACCCTACATTACGGTCCCCATGTTCACAATTTCCAACACCAAGAACAAGTTCACTGTCATCGGCTGCGATAGTTACGCCTATATTTTTGGTCAAGTCGACGGGGAATCCTACAGAAGTGGGTGCATGGCGTTGTGTGGAAACAGTACAGAAAGTATAAAAGATGGGCCATGCTCTGGGAGTGGGTGTTGTCAGTTGGAGATTCCTGAAGGCCTAAAAAGAATAGATTTGGTGGTTGGAAGCTTTAATAACTATACTACCGTAAACGAAAGCATCAATCCATGTGGGTATGCTTTTGTAATCGAAGAAAACAGTTTTGAGTTCAAAAAAGATTATCTCACAAACTACACGGAATACGAAGTCCCGCTTGTGCTTGATTGGCGCATAAAAAGTGATACTTGTCCAACAGACAAATGTCTATGTGGACCAAAAAGCCAAATGATAATGAATGGATCTGGATATTATTGTCAGTGTCAGGATGGTTTCCACGGAAATCCTTATCTCGACCAAGGTTGTCAAGATATAAATGAATGCGAGGAAGGATCCCATCTGTGTGTACCCGACGCTTCGTGTGAAAACGCACCAGCGGGAAACTATACCTGCCATTGTCCTGAGAAGTATGAAGGAGATGGAAGACATGGGGGAACAGGTTGCAGACAAAAATATTCCAACTCCAAGTTGATTCAAATTGCCATTGGAACTGGAGTTGGATTCACAGTTTTTCTAATTGCTATTTCATGGTTATACTTGGGTTACAAGAAGTGGAGGTTCATCCAACGGAAAGAAGAGTTTTTCAAGAAAAATGGAGGCACCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCGACTGATACAGTTAGAATTTTCAGCCAAGAGGAGTTGGAGAAAGCTACAAACAAGTTCAATGAAAGCACGGTGGTAGGAAAAGGCGGCTATGGCACCGTTCACAAAGGAGTCTTAGCCGATGGTTCGGTTATCGCCATTAAGAAATCACAATTAGTTGACCAATCTCAAACTTCCCAATTCATCAACGAAGTCATTGTTCTGTCCCAAGTCAACCACCGTAACGTGGTCAAGCTCTTAGGGTGTTGTTTAGAGACAGAAGTTCCATTGTTGGTGTATGAGTTCATCACCAATGGCACACTCTTTGATCACATCCATGATCGGACCATTAATCACATATCTTGGGAAGCTCGCTTGAGAATAGCTTCTGAAACTGCAGGGGTCATTTCGTATTTGCATTCTTCAGCCTCTACTCCAATTATCCACAGGGATATCAAATCCACTAACATACTTTTGGACCATAATTTGACTGCAAAGGTGTCGGATTTCGGCGCCTCCAAGTTGGTTCCAATGGATCAAACTCAATTATCCACCATGGTGCAAGGGACTCTTGGATATTTGGATCCAGAATACTTGTCGACCAGTGAGTTGACGGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACTGGAAAGAAGGCTGTGTCTTTTGATGGGCCAGAAGCGGAGAGGAATCTAGCCAAGTATGTCCTTTGTGCAATGAAAGAAGATCGTTTAGCAGAAGTTGTGGATAAGAAAATGGTGATGGATGAAGGGAAGTTGAATCAAATAAAAGAAGTATCAAAGATAGCGAAAGAGTGTGTGAGAGTAAGAGGGGAGGAGCGACCCAACATGAAAGAGGTGGCTATGGAGTTGGAGGGATTAAAAGTGATGCAGGTTAAACACTCATGGATTAACAACAATTTATCCAACTCAGAAGAGATGATCAGCTTATTGGATGAAACTTCAAACTCCACCCAATTTCTTCTCAGCAGTAGTATGAATCCTACAAACGATAATAGTATAACAACCCACATTTTGACTACACATATCCCAGATGCAAGATGA 2256 42.55 MGRPTAKKLVRLIMAIVVNIAIFLAATASSSVPPQVKFKCKSKCGNLEIPYPFGITEKCYLNINFSIECRPQEDREIPFLMNSNIKVTNISLHGEIHVLNYVARACSKSDGSLYSNKPYITVPMFTISNTKNKFTVIGCDSYAYIFGQVDGESYRSGCMALCGNSTESIKDGPCSGSGCCQLEIPEGLKRIDLVVGSFNNYTTVNESINPCGYAFVIEENSFEFKKDYLTNYTEYEVPLVLDWRIKSDTCPTDKCLCGPKSQMIMNGSGYYCQCQDGFHGNPYLDQGCQDINECEEGSHLCVPDASCENAPAGNYTCHCPEKYEGDGRHGGTGCRQKYSNSKLIQIAIGTGVGFTVFLIAISWLYLGYKKWRFIQRKEEFFKKNGGTMLQQHLSQWQSPTDTVRIFSQEELEKATNKFNESTVVGKGGYGTVHKGVLADGSVIAIKKSQLVDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETEVPLLVYEFITNGTLFDHIHDRTINHISWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNLTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLSTSELTEKSDVYSFGIVLLELITGKKAVSFDGPEAERNLAKYVLCAMKEDRLAEVVDKKMVMDEGKLNQIKEVSKIAKECVRVRGEERPNMKEVAMELEGLKVMQVKHSWINNNLSNSEEMISLLDETSNSTQFLLSSSMNPTNDNSITTHILTTHIPDAR 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6307187 6311019 - MELO3C008442.2.1 Cme03g00447 322458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00447 751 Pfam Protein tyrosine and serine/threonine kinase 422 688 IPR001245 GO:0004672|GO:0006468
Cme03g00447 751 CDD STKc_IRAK 424 691 - -
Cme03g00447 751 CDD EGF_CA 290 326 - -
Cme03g00447 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 715 IPR045274 GO:0007166
Cme03g00447 751 ProSitePatterns Protein kinases ATP-binding region signature. 424 447 IPR017441 GO:0005524
Cme03g00447 751 Gene3D Laminin 246 332 - -
Cme03g00447 751 Gene3D Transferase(Phosphotransferase) domain 1 494 711 - -
Cme03g00447 751 SMART egfca_6 290 335 IPR001881 GO:0005509
Cme03g00447 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Cme03g00447 751 Gene3D Phosphorylase Kinase; domain 1 390 493 - -
Cme03g00447 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 715 - -
Cme03g00447 751 SUPERFAMILY EGF/Laminin 288 327 - -
Cme03g00447 751 Pfam Wall-associated receptor kinase galacturonan-binding 40 98 IPR025287 GO:0030247
Cme03g00447 751 SUPERFAMILY Protein kinase-like (PK-like) 396 689 IPR011009 -
Cme03g00447 751 SMART serkin_6 418 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00447 751 ProSiteProfiles Protein kinase domain profile. 418 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00447 751 ProSiteProfiles EGF-like domain profile. 290 329 IPR000742 -
Cme03g00447 751 Pfam EGF domain 294 329 IPR024731 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00447 Cme-Chr3:6307187 Cme03g00455 Cme-Chr3:6494386 0 dispersed
Cme03g00445 Cme-Chr3:6266225 Cme03g00447 Cme-Chr3:6307187 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64729 PF07714 PK_Tyr_Ser-Thr 5.10E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00447 - - cmos:111461403 893.264