Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00453 ATGGGACGTCCAACCGAGACGCTCATTCGACTCACAGCGGTGAAAATAATAGTCATCTTATCAGCGGCTTTTGTAGTCGCATCGGCCACGACGAACGCAACCGTGACCGTAGCTTCCCAAGCCTTACCCGGCTGCGACGAATGGTGCGGCGACGTGCGGATTCCTTATCCGTTCGGGATGAGGGAAGGGTGTTATCTAAATAATGAAACATTCTTACTTCAATGTCTTAGCCCAGCTGGTAGCCCAAATTCTCTAATGCCAGTTCTAGGCCCCAATATCATTACAAATATATCCATTATCACGGGGGAGATTAAACTGTTGAACAGGGTGGCGCAAGCTTGCCACCCTCCAGATACTGCTACCGATGTTTTTCCCGATATGGTTGTTGGTATACCTAACTACACTATTTCCCATACCAAAAACAAGTTCGTCGTGATAGGCTGCGATACATTCGCTATTGTTTCAGGGAATGTCGTAGATGGGCAATCCTTTCAATCTGGATGTTTGGCATTGTGTGATAACATTGGCACGGTAAAAGATGGGGCTTGCTCTGGTAGTGGGTGTTGTCAGCTGGATCTTCCTAGTGGGCTTGATTCTATGGTGTTCGAGGTCGCCAGTTTAACGAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGGTATGCGTTTGTAACAGAACGAGATAGCTTCGACTTCTCTTCAAAGTATATTCGAAATTTTCCTGAAAAAATAGTTCCGGTAGTGCTTGATTGGGCCATTAGTAATGATACTTGTGTGACGGCTAAGAACAAAACTAATTGTGTTTGTGGCAAAAATAGCACCAAGGTTGACTTACTTGATGATCCATCTAGATATCGTTGCCAGTGCCTGGATGGCTTTGAGGGGAATCCATATCTCCCCGATGGTTGTCAAGATATAGATGAGTGCAAGGACGACAATCTTAATGACTGCAGGTTTGAGTGTGTTAATACAATAGGAAGCTATACTTGCAATTGCCCAGAAGACTTTAAAGGAGATGGAAAACGTCAAGGAGATGGTTGCACTCGAAACTCCAAGTCTTTCGTTCAAATCATCGTTGGAGTTACTGTGGGCTTCACAGTTTTAGTAATTGGGAGTGCATGGTTATACTTGGGTTACAAAAAGTGGAAGTTCCTTAAACTGAAGGAGAAGTTTTTTGAGAAAAATGGTGGTTTGATGCTTCAACAACATCTTTCTCAATGGCAAGCATCCACTGATCATATGGTTAGAATTTTCACTAAAGAGGATTTGGACAAGGCTACAAACAAGTACGACGACAGTGCAGTGGTTGGAAAAGGTGGCTTTGGTACTGTTTACAAAGGAGTGTTAGACGATGGTTCCGTAGTTGCAATCAAGAAATCAAAATTAGTAGACCAATCTCAAACTGACCAATTCATCAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAATGTGGTCAAGCTCTTGGGATGCTGTCTAGAGACAGAAGTTCCATTGTTGGTGTACGAGTTCATCAGCAATGGTACGCTTTATGAATACGTCCATGATAAAACAAATGACCGCAATTCTCTTTCGTGGGAAGCTCGTTTGAGAATAGCTGCAGAAACTGCTGGGGTGATTTCATATTTGCATTCTTCAGCTTCCACTCCAATTATCCATAGAGATATCAAGACAACTAACATTCTTTTAGACCATAATTACACTGCAAAGGTATCTGATTTCGGTGCTTCCAAGTTGGTTCCGATGGATCAAACTCAGTTGTCAACAATGGTGCAAGGGACTCTCGGATATTTAGACCCTGAATACTTATTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTATAGTTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAAGGGCCAGAAGCGGAGAGGAACCTAGCCATGTACGTGATGTGTGCAATGAAGGAAAATCGTTTGGAAGAAGTTGTGGAAAAGGGAATGGCGACAAAAGCGAACATTGAGCAGATAAAAGAAGCCGCAAAGTTAGCAACAACGTGTTTAAGAATAAAGGGGGAGGAGCGGCCTAGCATGAAGGAGGTGGCTACGGATTTGGAAGGGTTGAGAGGGTTGAATGAGGCTAATGAGAAATTAGAGAGCAAAGGAGAGACAATGGTAGGTATTTGGGTGCAATCCGATGGAGCTTTAGAATCCACATCCAAGCAGTTTAGTGCGAGTGGGAGTACAAATATTGTGGATGATAGTATGAAGGTTCACATTTTGCCTCTGATTCACAATGGAAGATGA 2295 43.27 MGRPTETLIRLTAVKIIVILSAAFVVASATTNATVTVASQALPGCDEWCGDVRIPYPFGMREGCYLNNETFLLQCLSPAGSPNSLMPVLGPNIITNISIITGEIKLLNRVAQACHPPDTATDVFPDMVVGIPNYTISHTKNKFVVIGCDTFAIVSGNVVDGQSFQSGCLALCDNIGTVKDGACSGSGCCQLDLPSGLDSMVFEVASLTNHTNVSSFNPCGYAFVTERDSFDFSSKYIRNFPEKIVPVVLDWAISNDTCVTAKNKTNCVCGKNSTKVDLLDDPSRYRCQCLDGFEGNPYLPDGCQDIDECKDDNLNDCRFECVNTIGSYTCNCPEDFKGDGKRQGDGCTRNSKSFVQIIVGVTVGFTVLVIGSAWLYLGYKKWKFLKLKEKFFEKNGGLMLQQHLSQWQASTDHMVRIFTKEDLDKATNKYDDSAVVGKGGFGTVYKGVLDDGSVVAIKKSKLVDQSQTDQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTLYEYVHDKTNDRNSLSWEARLRIAAETAGVISYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVMCAMKENRLEEVVEKGMATKANIEQIKEAAKLATTCLRIKGEERPSMKEVATDLEGLRGLNEANEKLESKGETMVGIWVQSDGALESTSKQFSASGSTNIVDDSMKVHILPLIHNGR 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6463423 6466548 - MELO3C008445.2.1 Cme03g00453 322464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00453 764 SMART egfca_6 305 348 IPR001881 GO:0005509
Cme03g00453 764 CDD STKc_IRAK 436 704 - -
Cme03g00453 764 SUPERFAMILY EGF/Laminin 304 340 - -
Cme03g00453 764 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Cme03g00453 764 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 708 IPR045274 GO:0007166
Cme03g00453 764 CDD EGF_CA 305 339 - -
Cme03g00453 764 SUPERFAMILY Protein kinase-like (PK-like) 410 702 IPR011009 -
Cme03g00453 764 ProSitePatterns Calcium-binding EGF-like domain signature. 305 330 IPR018097 GO:0005509
Cme03g00453 764 Gene3D Plasmodium vivax P25 domain 248 354 - -
Cme03g00453 764 Gene3D Phosphorylase Kinase; domain 1 395 505 - -
Cme03g00453 764 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 321 332 IPR000152 -
Cme03g00453 764 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 26 708 - -
Cme03g00453 764 Gene3D Transferase(Phosphotransferase) domain 1 506 724 - -
Cme03g00453 764 ProSiteProfiles Protein kinase domain profile. 430 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00453 764 Pfam Calcium-binding EGF domain 305 341 IPR001881 GO:0005509
Cme03g00453 764 ProSiteProfiles EGF-like domain profile. 305 339 IPR000742 -
Cme03g00453 764 SMART serkin_6 430 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00453 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Cme03g00453 764 Pfam Protein tyrosine and serine/threonine kinase 435 701 IPR001245 GO:0004672|GO:0006468
Cme03g00453 764 SMART egf_5 257 304 IPR000742 -
Cme03g00453 764 SMART egf_5 308 348 IPR000742 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01134 Cme-Chr1:14549563 Cme03g00453 Cme-Chr3:6463423 0 dispersed
Cme03g00441 Cme-Chr3:6173057 Cme03g00453 Cme-Chr3:6463423 0 dispersed
Cme03g00445 Cme-Chr3:6266225 Cme03g00453 Cme-Chr3:6463423 0 dispersed
Cme03g00453 Cme-Chr3:6463423 Cme03g00456 Cme-Chr3:6494662 0 dispersed
Cme03g00453 Cme-Chr3:6463423 Cme03g00455 Cme-Chr3:6494386 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64730 PF07714 PK_Tyr_Ser-Thr 1.70E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00453 - - csv:101209870 1293.87