Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00456 ATGGGACGATGGACGAATACGGTTGTAAGAGTTGTGACTATCATATTATCAACCGCCATAGTAGTAGCTTCCTCACAAGCCTTACCTGACTGTGACGAATGGTGCGGCGACCTGCAAATTCCATATCCATTCGGATTAAAACAAGGATGTTATCTCAGCCAATCATTCTTGATTACATGCAACAAAACCACTAGCCCTCCGATGGCGTTTCTAATGGACACAAACATTAGCGTTACCAAGATATCACTCAACGGCGAGCTCCACATGTTGCAGCCTATAGTCCGATATTGTTACGCGGAAGTGCCAGTGGACGGTCCTTTTGTCCCCAACTCAACCAATCTTTCGGTACCGACGACCTTACCGATTGCGGATGGCAAAAACAAGTTCGTCGCCATCGGTTGCAATACGTTTGGTTTATTTGGCGGGATACTAAACGGAAGTGAATTTCTAACTGGGTGTATTTCCTTATGTTTAAAGGACAGTAGTACAGATGATGGAGTGTGCAATGGGAATGGATGTTGTGAGTTGGAGATTCCAAATGGATTAATGGATTTGAGTTTGTTTGTGGGTCAACTCTTGCCTGATCTCACTTTCATCAAGTACAATCCTTGTGGGCATGCTTTTGTGGTTGGAGATGAAGGGTTTGAGTTCGAATCTAAGTATACTGAGAGTTTTAAAGATGTGGAAGTTGAAGTTGTGACTAGTTGGGCTATTGGAAATGAAACTAATTTTGATTGTGGATCGCATAGTGAAAGGAATAGTAGCTTCTCTAATGATGGATCTAAATTTCATTGCCAATGCTTCGAGGGTTTTCAAGGGAATCCATATCTCCCACAAGGTTGTCAAGACATAGATGAATGTAAGGATGAAAAACTGAATCAGTGTAAATACAAGAGCAAGTGCGTTAACACAATCGGAAACTATACGTGCAAATGTCCTAAAAACTTTAAAGGAGATGGAAGACATGGGGGAGAAGGTTGCACTCGAGATTACAAGGCTTTCCTTCCAATCATAATTGGGATTGGAGTAGGATTCACAGTTTTTGTAATTGGTAGCACTTGGATATTCTTGGGTTACAAAAAGTGGAAGTTCATCAAAAGGAAAGAGAAATTTTTCGAAGAAAATGGAGGTTTCATACTTCAGCGACAACTTTCTCAATGGCAATCCCCAAATGAAATGGTCAGAATTTTCACCCAAGAAGAGTTGGAGAAGGCCACTAAAAACTACGACAATAGCACTATTGTTGGTAAAGGTGGGTATGGTACCGTTTATAAAGGAGTCTTAGAGGATGGTTTGACAGTGGCAATCAAGAAATCAAAATTTATAGACCAATCTCAAACTGACCAATTCATTAACGAAGTGATTGTTTTGTCTCAAATCAATCATCGCAATGTGGTTAGACTCTTGGGCTGTTGTTTAGAGACACAAGTCCCATTGTTGGTGTATGAGTTTATAGCCAATGGCACCCTCTTTGAACATATCCATGACAAAACCAAGTATTCTTCTCTTTTATGGGAAGCTCGTCTGAAAATAGCATTGGAGACTGCAGGTGTGCTTTCGTATTTACATTCTTCAGCTTCTACTCCGATTATACATAGAGATATCAAGACGACAAACATACTTTTAGATGACAATTACACTGCAAAGGTCTCTGATTTTGGAGCGTCGAAGTTGGTTCCAATGGATCAAACACAATTATCCACGATGGTGCAAGGGACATTAGGGTATTTAGACCCAGAGTACTTGTTAACAAGTGAGTTGACGGAGAAGAGCGACGTGTATAGCTTTGGAATAGTGTTGTTAGAGCTTATAACCGGGAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGAGGAGAGGAATCTAGCAATGTATGTTCTTTGTGCAATGAAGGAAGACCGGTTGGAAGAAGTTGTGGAGAAGAGGATGATGGTGAAAGAGGCAAATTTTGAAGAAATTAAAGAAGTGGCCAAGGTAGCAAAGAAGTGTGTGAGAATTAAAGGGGAAGAGCGACCGAACATGAAGGAAGTGGCTATGGAGTTGGAGAGAGTACGATTAATGCAAGTTCAACATTCATGGGTTAATAATAATAATTTGTCCAACGCAGAGGAAATGGTATGCTTGTTGGATGTTGAAGCTCCAGAATCCGAACATTTTGCGGTGAGTGGCACTATGAATACCGCTGGGGATAGCATAAAAGCTCGAATTTTGACTCACATCCACCGTGGAAGATGA 2232 41.13 MGRWTNTVVRVVTIILSTAIVVASSQALPDCDEWCGDLQIPYPFGLKQGCYLSQSFLITCNKTTSPPMAFLMDTNISVTKISLNGELHMLQPIVRYCYAEVPVDGPFVPNSTNLSVPTTLPIADGKNKFVAIGCNTFGLFGGILNGSEFLTGCISLCLKDSSTDDGVCNGNGCCELEIPNGLMDLSLFVGQLLPDLTFIKYNPCGHAFVVGDEGFEFESKYTESFKDVEVEVVTSWAIGNETNFDCGSHSERNSSFSNDGSKFHCQCFEGFQGNPYLPQGCQDIDECKDEKLNQCKYKSKCVNTIGNYTCKCPKNFKGDGRHGGEGCTRDYKAFLPIIIGIGVGFTVFVIGSTWIFLGYKKWKFIKRKEKFFEENGGFILQRQLSQWQSPNEMVRIFTQEELEKATKNYDNSTIVGKGGYGTVYKGVLEDGLTVAIKKSKFIDQSQTDQFINEVIVLSQINHRNVVRLLGCCLETQVPLLVYEFIANGTLFEHIHDKTKYSSLLWEARLKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDDNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVCFDGPEEERNLAMYVLCAMKEDRLEEVVEKRMMVKEANFEEIKEVAKVAKKCVRIKGEERPNMKEVAMELERVRLMQVQHSWVNNNNLSNAEEMVCLLDVEAPESEHFAVSGTMNTAGDSIKARILTHIHRGR 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6494662 6499073 - MELO3C008452.2.1 Cme03g00456 322467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00456 743 CDD STKc_IRAK 415 682 - -
Cme03g00456 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 703 IPR045274 GO:0007166
Cme03g00456 743 CDD EGF_CA 283 319 - -
Cme03g00456 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Cme03g00456 743 Gene3D Laminin 241 327 - -
Cme03g00456 743 ProSitePatterns Calcium-binding EGF-like domain signature. 283 310 IPR018097 GO:0005509
Cme03g00456 743 Pfam Calcium-binding EGF domain 283 319 IPR001881 GO:0005509
Cme03g00456 743 ProSiteProfiles EGF-like domain profile. 283 322 IPR000742 -
Cme03g00456 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 13 703 - -
Cme03g00456 743 Pfam Protein tyrosine and serine/threonine kinase 414 680 IPR001245 GO:0004672|GO:0006468
Cme03g00456 743 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cme03g00456 743 Pfam Wall-associated receptor kinase galacturonan-binding 31 85 IPR025287 GO:0030247
Cme03g00456 743 SMART egfca_6 283 328 IPR001881 GO:0005509
Cme03g00456 743 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Cme03g00456 743 SUPERFAMILY EGF/Laminin 282 320 - -
Cme03g00456 743 Gene3D Transferase(Phosphotransferase) domain 1 485 705 - -
Cme03g00456 743 ProSiteProfiles Protein kinase domain profile. 409 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00456 743 Gene3D Phosphorylase Kinase; domain 1 381 484 - -
Cme03g00456 743 SMART serkin_6 409 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00456 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00453 Cme-Chr3:6463423 Cme03g00456 Cme-Chr3:6494662 0 dispersed
Cme03g00456 Cme-Chr3:6494662 Cme07g00011 Cme-Chr7:125883 0 dispersed
Cme03g00456 Cme-Chr3:6494662 Cme03g00458 Cme-Chr3:6524486 2.61E-54 proximal
Cme03g00456 Cme-Chr3:6494662 Cme03g00459 Cme-Chr3:6529735 0 proximal
Cme03g00456 Cme-Chr3:6494662 Cme03g00460 Cme-Chr3:6532804 8.18E-143 proximal
Cme03g00455 Cme-Chr3:6494386 Cme03g00456 Cme-Chr3:6494662 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64732 PF07714 PK_Tyr_Ser-Thr 3.80E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00456 - - csv:101209380 1238.4