Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00459 ATGTTCTTAGATATAGACGAATGCAAGGATGAAACACTGAATCAGTGTAAATACAAGAGCAAGTGTGTTAACACAATAGGAAACTATACATGCAAATGTCCTAAACACTTTAAAGGAGATGGAAGAAATGGGGGAGAAGGCTGCACTCGAGATTCTAAGACATTCGTTATTCCCATCATAATCGGGGTTGGAGTAGGGTTCACAGTTTTTGTAATTGGTAGCACTTGGATATTCCTGGGTTACAAAAAGTGGAAGTTCATCAAAAGGAAAGAGAAATTTTTCGATGAAAATGGAGGTTTCATACTTCAGCGACAACTTTCTCAATGGCAATCCCCAAATGAAATGGTCAGAATCTCCACCCAAGAAGAGTTGGAGAAGGCCACTAAAAACTACGACAATAGCACTATTGTTGGTAAAGGTGGGTATGGTACAGTTTACAAAGGGGTCTTAAAGAATGGTTTGGCAGTGGCAATCAAGAAATCAAAATTTATGGACCAATCTCAAACTGACCAATTCATTAACGAAGTGATTGTTTTGTCTCAAATCAATCATCGCAATGTGGTTAGAATCTTGGGGTGTTGTTTAGAGACACGAGTCCCGTTGTTGGTGTATGAGTTTGTAACCAATGGCACCCTCTTTGAACACATCCATGACAAAACCAAGTACGCTTCTCTTTCATGGGAAGTTCGTTTCAAAATAGCATTGGAGACTGCAGGTGTGCTTTCATATTTACATTCTTCAGCTTCCACTCCAATTATACATAGAGATATCAAGACCACAAACATACTTTTAGATGAGAATTACACCGCGAAGGTCTCTGATTTTGGAGCGTCGAAGTTGGTTCCAATGGATCAAACACAACTATCCACAATGGTGCAAGGGACGTTAGGGTATTTAGACCCAGAGTACTTGTTGACAAGTGAGTTGACGGAAAAGAGCGACGTGTATAGCTTTGGAATAGTGTTGTTAGAGATTATAACCGGAAAGAAGGCGGTGTGTTTTGATGGGCCAGAAGAGGAGAGGAATTTAGCAATGTATGTGCTTTGTGCAATGAAGGAAGTGTTGGAAACGTAA 1074 40.04 MFLDIDECKDETLNQCKYKSKCVNTIGNYTCKCPKHFKGDGRNGGEGCTRDSKTFVIPIIIGVGVGFTVFVIGSTWIFLGYKKWKFIKRKEKFFDENGGFILQRQLSQWQSPNEMVRISTQEELEKATKNYDNSTIVGKGGYGTVYKGVLKNGLAVAIKKSKFMDQSQTDQFINEVIVLSQINHRNVVRILGCCLETRVPLLVYEFVTNGTLFEHIHDKTKYASLSWEVRFKIALETAGVLSYLHSSASTPIIHRDIKTTNILLDENYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLEIITGKKAVCFDGPEEERNLAMYVLCAMKEVLET 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6529735 6530986 - MELO3C027309.2.1 Cme03g00459 322470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00459 357 CDD EGF_CA 4 40 - -
Cme03g00459 357 Gene3D Phosphorylase Kinase; domain 1 100 206 - -
Cme03g00459 357 Pfam Protein kinase domain 131 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00459 357 SUPERFAMILY EGF/Laminin 4 41 - -
Cme03g00459 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Cme03g00459 357 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 3 353 - -
Cme03g00459 357 Pfam Calcium-binding EGF domain 4 41 IPR001881 GO:0005509
Cme03g00459 357 Gene3D Laminin 3 46 - -
Cme03g00459 357 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 3 353 IPR045274 GO:0007166
Cme03g00459 357 SMART serkin_6 131 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00459 357 ProSiteProfiles EGF-like domain profile. 4 43 IPR000742 -
Cme03g00459 357 ProSitePatterns Calcium-binding EGF-like domain signature. 4 31 IPR018097 GO:0005509
Cme03g00459 357 SMART egfca_6 4 49 IPR001881 GO:0005509
Cme03g00459 357 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cme03g00459 357 SUPERFAMILY Protein kinase-like (PK-like) 110 342 IPR011009 -
Cme03g00459 357 Gene3D Transferase(Phosphotransferase) domain 1 207 356 - -
Cme03g00459 357 ProSiteProfiles Protein kinase domain profile. 131 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00459 357 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 22 33 IPR000152 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00455 Cme-Chr3:6494386 Cme03g00459 Cme-Chr3:6529735 0 dispersed
Cme03g00459 Cme-Chr3:6529735 Cme07g00011 Cme-Chr7:125883 2.35E-141 dispersed
Cme03g00456 Cme-Chr3:6494662 Cme03g00459 Cme-Chr3:6529735 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64733 PF00069 Pkinase 1.00E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00459 - - cmo:103503234 675.241