Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00482 ATGATCTCTCCTCCGCCGTCCCCGCCTTCGCTTCCACTCCCCTCCTCCGCAAGAAGCGTATGCCCAGAAACCGTCGCCCTTCTTCTTCCTCTTCTTCTTCCTCCTCCTCCAATCTTCCTTCTTTCTCCTTTCCTTCTTCTTCCTCCTCCACTCCCCACCTCCCTTCTCCTCGGGTGCAAAAAAAAAAAAAAAAAAAAAAGGTCGTGGCTTAGGGTAAATGATTCAAGGAAGCTGAAGTTTCTTTTTCAAAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTCAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCCAAAGAAGGAATGATGATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATACAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGAGACTTTGTCAATGCTCATGCCTTGCATCTTGGAGATTTCATCATGATTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTCGGAGCAAGAAATATATTCCGACATAACAACAAATGATGTTGTGATCAACGAAGACATTGTGTTTCAAGACTACGATGCTAGCAAAGCGGCTAGCTCCATCTACGTGCCTAGTCCAACCATGGAACATCCTGTGTCGTCATTCATCTACGACACTAGTTGTGCCTTCGACAATGATTCACCTTTCGACTTTATGACTGGATCAATGACCAACTACTCAAGAATGGGAGGTCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGAAGATTTCTACTGA 831 43.8 MISPPPSPPSLPLPSSARSVCPETVALLLPLLLPPPPIFLLSPFLLLPPPLPTSLLLGCKKKKKKKRSWLRVNDSRKLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGMMITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHALHLGDFIMIYQDCEEHNYVIQAKKASEQEIYSDITTNDVVINEDIVFQDYDASKAASSIYVPSPTMEHPVSSFIYDTSCAFDNDSPFDFMTGSMTNYSRMGGLEGFGSVENLSLEDFY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7028836 7031618 - MELO3C027255.2.1 Cme03g00482 322493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00482 276 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 63 276 IPR044800 GO:0003700
Cme03g00482 276 SMART B3_2 82 184 IPR003340 GO:0003677
Cme03g00482 276 ProSiteProfiles B3 DNA-binding domain profile. 82 184 IPR003340 GO:0003677
Cme03g00482 276 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 63 276 - -
Cme03g00482 276 SUPERFAMILY DNA-binding pseudobarrel domain 80 179 IPR015300 -
Cme03g00482 276 Gene3D - 78 196 IPR015300 -
Cme03g00482 276 Pfam B3 DNA binding domain 82 180 IPR003340 GO:0003677
Cme03g00482 276 CDD B3_DNA 80 182 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01723 Cme-Chr1:24029322 Cme03g00482 Cme-Chr3:7028836 3.74E-37 dispersed
Cme03g00482 Cme-Chr3:7028836 Cme08g00291 Cme-Chr8:1867762 2.78E-30 dispersed
Cme03g00482 Cme-Chr3:7028836 Cme09g01901 Cme-Chr9:23146679 1.13E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40989 PF02362 B3 6.30E-18 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00482 - - cmo:103504182 414.846