Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00489 ATGAAATTTCTCCAAAATGGGGTCGCCCGCGAGTCTTTCCAGGTTGATTCCGGCCGAACTGTGCTGGTGGGCATGAAATTGGATTCCCATAGTAGAGAGTTGCTTACTTGGGCTTTGGTAAAGGTTGCTCAGCCTGGTGACCTTGTGATCGCTCTTCATGTTCTTGGCAACGATGAAATTGTGAATCAAGATGGAAAGTCTTCGCTTCTTTCTCTTGTAAAAGCGTTCGACTCTGTTCTGGCTGTGTATGAAGGTTTTTGTAACTTGAAGCAGGTGGATCTGAAACTCAAAATATGCAGAGGAGAATCAGCTAGAAAAATATTAGTTCGTGAAGCAAAATCGTATCGTGCTACTAACGTGATTGTTGGGACTGCTCGTAAGCACCACAAAATCCGTTCATCGACTTCCGTTGCCAAGTACTGCGCCAAAAAATTACCCAAAGATTTTTGGGTTCTCGCTGTTCATAATGGGAAAGTGATTTTCCAACGAGAGGGTTGTCCAGTGGCAACAGGGGACTGCCATGGAAATGAGGAACAACGCCATAGCAATTTACTTGCTGCAGTTTACGGATCGTTGGCTAGCTCTCCCAAAGTTCAAAGCGGTGAGAGTTTCGGTTCTCTGTTGGCGAGGGACAGAGATAATCTGGGAATTGGTAAGAATTCGGTTCAGGGATTTGAAAAAGCCATATTAGTTGGTACTGATAAACAGAACTGCTCAATTTGTGGATCGGAGTCGAGTTTTGTGGAACAATCAGCAGAGATATCTTCTAGTGATGGAGAAAAACATGATGAATCTCTGGCTATAGTTCCAGTACAAAAAGTCGAGGTAGCTTCGAGCTCGATTACTAAGTTGATCAAGCAATTGCCTGAAGTGAAACCAGGTTGGCCTCTTCTTAGACATGTTGATCACTCATGTGAATCGGGTCGACAAGTTTCTTCCGATCGATCATTGGCCAAGCAAATCTCTGTAGTTCAGTGGGCAATGAGGTTACCTAGCCGGTCTCCTTCGTATCCTGCTGCTTTGGATTGCAAATCTAATACCTCTGATCAATCTTTGGGTCTTGATGGAGAAAATGGGGCAATGGTTCTGGTGGGTTCTGAACCAGTGCCTTCTCCACTTTCCTCCGACTCTGATACCGAAACCTTACCTAAAGAATTGGAAGGTTTCCATGAGAAATACTCATCAACTTGTAGATTATTTAATTATCATGAACTCCTTACAGCAACATCAAATTTCTTACCCGAAAATTTGATTGGGAAAGGAGGAAGCAGCCAGGTTTTTAGAGGCTGCCTTCCCGATGGCAAGGAGGTTGCTGTGAAGATCTTGAAGACATCAGAAGATGTTCTGAAGGAGTTCGTTATGGAAGTCGAGATCATTACCTCCTTAAGTCACAAGAATATTATTTCCCTTTTGGGATTTTGCTTTGAAAACAGCAAATTCTTGCTGGTTTATGATTTTTTATCAAGAGGATGTCTTGAAGAAATCCTTCACGGGAATAGAAAGAATCCAAATACATTTGGTTGGAGTGAAAGATACAAGGTAGCTGTTGGTGTAGCTGAGGCGTTGGATTATCTCCATCTAGATGCTCAGCATATAATCCATAGGGATGTTAAATCGTCAAACATTTTGTTATCTGACGATTTCGAACCGCAGTTGTCAGATTTTGGGCTGGCTAAACGAGCGTCAAACTCGTCGCATGTAACCTGTACAGATGTTGCAGGAACCTTCGGTTACCTGGCTCCTGAGTATTTCATGTACGGCAAGGTAAATGACAAGATTGATGTCTATGCCTATGGTGTGGTACTCCTTGAACTTCTTTCCGGGAGAAAACCGATAAGCACCGAGTATCCAAAAGGACAAGAAAGCCTGGTCATGTGGGCAAGGCCAATTTTAATCGATGGGAAGGTGTCTCGATTACTTGATCCTACCTTGGGAGGTAACTACAACCAGGATGAGATGGAGCGTGTGGTTCTTGCAGCAAGCCTTTGTATCAGACGTGCCCCACGAGCAAGACCTCCAATGAGCCTTGTTTTGAAACTTCTCCAAGGTGATGCAGACGTAACCAAATGGGCGAGGCAACAAATCAATGCTCTAGGGGATTCCAACACTCTAGATGATGAAGTATGTCCACGATCCGATATCCAATCACACCTCAACCTTGCACTGCTCGATGTCGATGATGACTCGCTCTCCTTGAGCAGCATTGAACATAGTATCTCATTAGAGGACTATTTACAAGGCAGATGGAGCCGTTCATCAAGTTTCGACTAA 2271 43.86 MKFLQNGVARESFQVDSGRTVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNQDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGESARKILVREAKSYRATNVIVGTARKHHKIRSSTSVAKYCAKKLPKDFWVLAVHNGKVIFQREGCPVATGDCHGNEEQRHSNLLAAVYGSLASSPKVQSGESFGSLLARDRDNLGIGKNSVQGFEKAILVGTDKQNCSICGSESSFVEQSAEISSSDGEKHDESLAIVPVQKVEVASSSITKLIKQLPEVKPGWPLLRHVDHSCESGRQVSSDRSLAKQISVVQWAMRLPSRSPSYPAALDCKSNTSDQSLGLDGENGAMVLVGSEPVPSPLSSDSDTETLPKELEGFHEKYSSTCRLFNYHELLTATSNFLPENLIGKGGSSQVFRGCLPDGKEVAVKILKTSEDVLKEFVMEVEIITSLSHKNIISLLGFCFENSKFLLVYDFLSRGCLEEILHGNRKNPNTFGWSERYKVAVGVAEALDYLHLDAQHIIHRDVKSSNILLSDDFEPQLSDFGLAKRASNSSHVTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRKPISTEYPKGQESLVMWARPILIDGKVSRLLDPTLGGNYNQDEMERVVLAASLCIRRAPRARPPMSLVLKLLQGDADVTKWARQQINALGDSNTLDDEVCPRSDIQSHLNLALLDVDDDSLSLSSIEHSISLEDYLQGRWSRSSSFD 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7136649 7140608 - MELO3C008469.2.1 Cme03g00489 322500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00489 756 CDD USP_Like 20 154 - -
Cme03g00489 756 Pfam Protein kinase domain 416 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00489 756 SMART serkin_6 412 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00489 756 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 151 - -
Cme03g00489 756 Gene3D HUPs 18 155 IPR014729 -
Cme03g00489 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Cme03g00489 756 SUPERFAMILY Protein kinase-like (PK-like) 393 687 IPR011009 -
Cme03g00489 756 Pfam Universal stress protein family 19 151 IPR006016 -
Cme03g00489 756 PANTHER - 13 739 - -
Cme03g00489 756 Gene3D Transferase(Phosphotransferase) domain 1 487 699 - -
Cme03g00489 756 Gene3D Phosphorylase Kinase; domain 1 377 486 - -
Cme03g00489 756 ProSiteProfiles Protein kinase domain profile. 412 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00489 756 PANTHER OS08G0249100 PROTEIN 13 739 - -
Cme03g00489 756 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00489 - - - csv:101203034 1418.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00489 Cme-Chr3:7136649 Cme11g00032 Cme-Chr11:332278 0 dispersed
Cme11g01956 Cme-Chr11:27612220 Cme03g00489 Cme-Chr3:7136649 1.39E-74 dispersed
Cme03g00489 Cme-Chr3:7136649 Cme04g01192 Cme-Chr4:16312530 1.41E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64734 PF00069 Pkinase 5.50E-45 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00489 Cme_Chr03 FPKM 21.556623 23.190203 47.385849 49.29697 60.844738 58.901363 60.414055 39.4977 38.326283 36.326382