Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00509 ATGTCTGCCCATAATCGTCGCCCTTCCTTTTCTTCCTCCACAACGTCCTCCTTGGCCAAACGGCAAGCGTCCTCCGCGTCTTCATCGGACAATGTGGGTAAGGTTTTGGCAGTTCCGCCACATTTGGCCAAAAAGCGAGCGCCACTTGGAAACCTAACGAATTTTAAGAATGTGTCTCACAGTGCGGCCAAGAGCTCTGGTCCGCCTCCTATTATGTATGTTTTCATAGCTGTCTTTGTTTCCATTCGAAGCAACAAGTATGAGAAATCGAAATATACAATGGTGCCTTGTGCAACCAAAGCTCTAAAGGCCAGAAAGAGTTCCCCTGCAAGAACTCGCAGCACTAACATGCCAGTGACTAATACAACCACAATGCTTGATGTCAAAACAACGAATCCAGTTGCTCCTAGCAACGTTACAGCTTTCTCAAGAACTGACGCCACGGCTGTCTCCAGTTGTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCGGTTTCCTTAGATGAAACTATGTCGACTTGTGATTCTTTTAAGAGTCCTGACGTCGAGTACATGGACAATACTGATGTCCCAGCTGTTGATTCTGTTGAGAGGAAGACTAAAAGCAGTCTCTGCATTTCAGGCCCTGCACCAATTAGTTGTCAGGCACCAATTAAAGGTAGCATATGCAATAGAGATGTACTTACAGAAATGGAAATAGATGGCAACATTGTCGATGTTGATACGGATTTCATGGATCCTCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGATTTCATGGAGAAGATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGGTTGATTGGCTTGTGGAGGTAGCAGAAGAGTACAGGCTTGTGCCAGACACTCTATATTTGACCGTGAACTACATTGATAGATTCCTATCTGGGAATTCGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATATGTGCGCCTCAAGTGGAAGAATTTTGCTACATTACCGATAACACATATTTTAAAGAAGAGGTTTTGGAAATGGAATCGTCTGTCTTGAATTACTTGAAACGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGAGCAGCACCTATGAGGTTCCATCAATGCAGTTGGAATGCTTGTCCAACTTCCTTGCCGAATTATCTCTTTTAGAATACAGTATGCTCTGCTACGCACCGTCACTTGTAGCTGCCTCGGCAATCTTCTTGGCAAAGTTCATTCTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAGCATTATACACATTATCAGCCTTCCGATCTTGTCGACTGCGTTAAAGATTTACATGGCCTCTGCTGTAACAACACTCATAATTCTAGCTTACCAGCCATCAGAGAAAAATACAGCCAGCATAAGTACAAACATGTGGCGAAGAAGTACTGCCCTCCAACGATACCACCGGAGTTCTTCCAAAATCAAACACATTAA 1551 43.71 MSAHNRRPSFSSSTTSSLAKRQASSASSSDNVGKVLAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSGPPPIMYVFIAVFVSIRSNKYEKSKYTMVPCATKALKARKSSPARTRSTNMPVTNTTTMLDVKTTNPVAPSNVTAFSRTDATAVSSCMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYMDNTDVPAVDSVERKTKSSLCISGPAPISCQAPIKGSICNRDVLTEMEIDGNIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRFLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLEMESSVLNYLKRFVRAAQGATDESSTYEVPSMQLECLSNFLAELSLLEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHGLCCNNTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7597299 7603598 - MELO3C010643.2.1 Cme03g00509 322520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00509 516 Gene3D - 257 499 - -
Cme03g00509 516 CDD CYCLIN 376 470 IPR013763 -
Cme03g00509 516 CDD CYCLIN 287 376 IPR013763 -
Cme03g00509 516 Pfam Cyclin, N-terminal domain 257 380 IPR006671 -
Cme03g00509 516 PIRSF Cyclin_A_B_D_E 83 510 IPR039361 -
Cme03g00509 516 PIRSF Cyclin_A_B_D_E 6 208 IPR039361 -
Cme03g00509 516 ProSitePatterns Cyclins signature. 288 319 IPR006671 -
Cme03g00509 516 SUPERFAMILY Cyclin-like 375 505 IPR036915 -
Cme03g00509 516 SMART Cyclin_C_2 373 503 IPR004367 -
Cme03g00509 516 PANTHER CYCLIN-A1-1 34 514 - -
Cme03g00509 516 MobiDBLite consensus disorder prediction 1 32 - -
Cme03g00509 516 Gene3D - 271 384 - -
Cme03g00509 516 SUPERFAMILY Cyclin-like 247 380 IPR036915 -
Cme03g00509 516 PANTHER CYCLINS 34 514 IPR039361 -
Cme03g00509 516 SMART cyclin_7 293 377 IPR013763 -
Cme03g00509 516 SMART cyclin_7 380 471 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00509 Cme-Chr3:7597299 Cme07g00308 Cme-Chr7:1981391 9.20E-96 dispersed
Cme03g00509 Cme-Chr3:7597299 Cme04g00381 Cme-Chr4:3058212 3.31E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00509 K06627 - csv:101221569 921.768