Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00512 ATGACAGATACAGGTGATACCCAGCCGTCTGAACAAGTCTGTAGCTTCTTCAGAAAACCCACCAAAAACAAAAACATCAGGAAGCGGACGGTTGATGAAGACGAAGAGGAGGACTCTAAAGCTGAGACTTCGTTTCTGCTAAACCAGAAGAAAGCCCCCAAGACTGAAAGCAAGCTTTATTTTTCTTCTGGACCTTCTAAAAATTCATTGTCTAATGAATCCAATGTGGAACCTAATAAACCAATTTTCCAATTTGAGTCTTCAAAGGAAATTCAAGTTCACCATGATAGCAGAGCAACTGCAACCCTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGGAAAGGCAAGAGCTCTGGTGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTTGATTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCTAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTCGAGCTTCTGCTCACATAAGAGCATCAGCGAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTATGGAGATGCGTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAGGAAGTAGAGAAAGCAAGAAAGAGAAAATTAGCTATGAAATCTGATGATGGGGATGAGGATTCTTCGGAACAAAGTGATGAAGATGAAGAAGGTGCATTGCCCTTTGCTTGTTTTATTTGTCGCGAGCCTTTTGTGGATCCTGTTGTGACAAAGTGCGGGCATTACTTCTGTGAGCATTGTGCACTAAAGGGGCCGTTTTGGGGCACCAACAAGAAGTTGGTAGAGTGTGTTATTATGGCCCGACCCATGTTTGGGGCACCAAATATAGTAGTGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCGACGCTTGGAATCTTTAACACAGCACATGAGATACGCAAAAAGATGGCACAGAGTAAATAA 1053 43.87 MTDTGDTQPSEQVCSFFRKPTKNKNIRKRTVDEDEEEDSKAETSFLLNQKKAPKTESKLYFSSGPSKNSLSNESNVEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDSSEQSDEDEEGALPFACFICREPFVDPVVTKCGHYFCEHCALKGPFWGTNKKLVECVIMARPMFGAPNIVVHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7631333 7638336 - MELO3C010640.2.1 Cme03g00512 322523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00512 350 ProSiteProfiles Zinc finger RING-type profile. 263 302 IPR001841 -
Cme03g00512 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 316 350 - -
Cme03g00512 350 SUPERFAMILY RING/U-box 262 292 - -
Cme03g00512 350 ProSitePatterns Zinc finger RING-type signature. 278 287 IPR017907 -
Cme03g00512 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Cme03g00512 350 MobiDBLite consensus disorder prediction 45 86 - -
Cme03g00512 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 348 IPR013083 -
Cme03g00512 350 MobiDBLite consensus disorder prediction 1 102 - -
Cme03g00512 350 SUPERFAMILY CCCH zinc finger 184 216 IPR036855 GO:0046872
Cme03g00512 350 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Cme03g00512 350 PANTHER ZINC FINGER PROTEIN 183 316 350 IPR039971 -
Cme03g00512 350 PANTHER ZINC FINGER PROTEIN 183 1 303 IPR039971 -
Cme03g00512 350 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 1 303 - -
Cme03g00512 350 MobiDBLite consensus disorder prediction 1 19 - -
Cme03g00512 350 CDD RING-HC_RNF113A_B 261 329 - -
Cme03g00512 350 Pfam RING-type zinc-finger 263 295 IPR027370 -
Cme03g00512 350 Gene3D - 183 217 - -
Cme03g00512 350 SMART ring_2 263 328 IPR001841 -
Cme03g00512 350 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40991 PF13445 zf-RING_UBOX 1.30E-06 CL0229 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00512 K13127 - csv:101221334 617.461