Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00519 ATGCCTTCATTGTCATTCAAACCCCTTCTTCTAATGACGAAGAGATTCAAACCCACTACACCCTCCACTCCCTCCACAAAGCCATCGCCACCGCCGCCGTCTCCCCCTACCCCTCAACTCTCCCATTCAAAACCAACCACTGTCTCCATCCACCACTCATCCAAAAACCCAAACAAAACCCTAACCCTCCTCAAATCCCCCCAATCCCCATCATCCTCCAACTGGGTCTCTCTAAATCTCACCAGATCAGACCTCTCTTTGCCTCTCACTTTCCCCACCGGCCAAACCTTCCGCTGGAAACAAACCAACCCCCTTGAGTTCACCGGCGTCGTTGGCTCTCATCTCATCTCTCTCAACCATCTTCCAAACGGCGAAGTTTCATATTGCCTTCACTTTTCTTCTACATCCACCTCCTCCTCCGCCGCCGCCAGATTGGCATTACTTGATTTCCTTAACGCCGGCATCTCCCTGAGTTCCATTTGGGAGGTATTCTCGGCGGCTGATCCGAGATTCGATGCGTTGGCTCGCCATTTGGAGGGGGCTCGGGTTCTCAGGCAAGACCCACTTGAATGTTTGATTCAGTTTTTGTGTTCTTCCAATAATAATATTGGGAGAATCACCAAAATGGTGGATTACATCTCATCACTCGGGAATTATTTGGGTAATGTTGGAGGTTTTGATTTCCATGAATTCCCTTCTTTGGAGAGGCTGTCCTTGGTCTCTGAGGCTGAGCTTAGAGAGGCAGGCTTTGGTTACAGGGCTAAATACATAATTGGCACTGTGAATGCACTGAAAGCAAAACCTGGTGGAGGTGCAGAATGGCTTCTGTCCCTTCGTGATTCAGATCTTGAAGAGGTGATTGGAGCCCTTTCTACTTTACCGGGCGTGGGTCCAAAGGTAGCAGCTTGTGTCGCTCTCTTCTCTCTTGACCAGCACCACGCCATTCCTGTTGACACACATGTCTGGCAGATTGCTACAAGGTACCTTGTTCCTGAGCTTGCTGGTGCACGCCTAACACCAAAGCTTTGCAATCGTGTGGCTGAGGCATTTGTCAGCAAGTATGGAAAATACGCTGGATGGGCTCAAACTCTGCTTTTCGTCGCTGAGTTGCCTCAACAGAAGGCCCTTTTACCAGCAACTCTTGAGAATACCAAAAGGAAAAGATCTACAAAGCAGCAGAGAGATATGGCACATGCTGGTACTGTGAATTATCATGCCATGTACTTCATGCTAGGCATATTCAATCATTTACGTGCATTGTGCATCGACCAACAATGTTTTCGTGACGTGTGGACATGGATCGCCTTGAAAAATGCTAATGTGTTTCAGGAGAAAACTCACATGTTCTACAATGGGTCTGGAGTTTGGCGAGTGACACATTCCAATAGCATAGCTTTGACAATCACCAGATGGGACACTTGCCCACATGTTTTGGTAATCAAAACGGAATCCAAAGATATCTCAACTGGGTTTCCTGTTTCTTCTTCGAGAATAACCAACTGGTTGTCAGTTGGCTTGAGGAAGGAACGCGGCTCCCCTTTTGGGGTAAGGAAGGAGACCCAGTACCGGCCAATGCCCCGGCCGTTAACCCAAGCTGCACCCTTCCCCATGGAACCAAGGTTCAGTGCAATTGGATCATCACCAGGAGGTGCATCAAACCGAGTCTGCCCGATTAGCAATGAATGA 1686 48.64 MPSLSFKPLLLMTKRFKPTTPSTPSTKPSPPPPSPPTPQLSHSKPTTVSIHHSSKNPNKTLTLLKSPQSPSSSNWVSLNLTRSDLSLPLTFPTGQTFRWKQTNPLEFTGVVGSHLISLNHLPNGEVSYCLHFSSTSTSSSAAARLALLDFLNAGISLSSIWEVFSAADPRFDALARHLEGARVLRQDPLECLIQFLCSSNNNIGRITKMVDYISSLGNYLGNVGGFDFHEFPSLERLSLVSEAELREAGFGYRAKYIIGTVNALKAKPGGGAEWLLSLRDSDLEEVIGALSTLPGVGPKVAACVALFSLDQHHAIPVDTHVWQIATRYLVPELAGARLTPKLCNRVAEAFVSKYGKYAGWAQTLLFVAELPQQKALLPATLENTKRKRSTKQQRDMAHAGTVNYHAMYFMLGIFNHLRALCIDQQCFRDVWTWIALKNANVFQEKTHMFYNGSGVWRVTHSNSIALTITRWDTCPHVLVIKTESKDISTGFPVSSSRITNWLSVGLRKERGSPFGVRKETQYRPMPRPLTQAAPFPMEPRFSAIGSSPGGASNRVCPISNE 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7764241 7768061 + MELO3C010637.2.1 Cme03g00519 322530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00519 561 CDD ENDO3c 190 366 IPR003265 GO:0006284
Cme03g00519 561 Pfam HhH-GPD superfamily base excision DNA repair protein 193 328 IPR003265 GO:0006284
Cme03g00519 561 MobiDBLite consensus disorder prediction 41 60 - -
Cme03g00519 561 Pfam 8-oxoguanine DNA glycosylase, N-terminal domain 77 192 IPR012904 GO:0003684|GO:0006289|GO:0008534
Cme03g00519 561 MobiDBLite consensus disorder prediction 1 60 - -
Cme03g00519 561 Gene3D - 162 370 IPR023170 -
Cme03g00519 561 PANTHER N-GLYCOSYLASE/DNA LYASE 73 392 - -
Cme03g00519 561 Gene3D - 65 149 - -
Cme03g00519 561 SUPERFAMILY DNA-glycosylase 187 367 IPR011257 GO:0003824|GO:0006281
Cme03g00519 561 MobiDBLite consensus disorder prediction 546 561 - -
Cme03g00519 561 SUPERFAMILY TATA-box binding protein-like 72 186 - -
Cme03g00519 561 Gene3D Hypothetical protein; domain 2 187 311 - -
Cme03g00519 561 PANTHER 8-OXOGUANINE DNA GLYCOSYLASE 73 392 - -
Cme03g00519 561 SMART endo3end 197 370 IPR003265 GO:0006284
Cme03g00519 561 MobiDBLite consensus disorder prediction 538 561 - -
Cme03g00519 561 MobiDBLite consensus disorder prediction 23 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00519 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] - csv:101219118 702.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01718 Cme-Chr12:23964744 Cme03g00519 Cme-Chr3:7764241 3.04E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g236 . . . . . . . . . Cmo15g00669 . . . . Sed01g3102 . . Bhi04g01882 Tan11g1252 Cmetu03g0437 . Hepe02g2230 . Lcy10g1243 Cla08g00614 Cam08g1028 Cec08g0617 Cco08g0729 Clacu08g0738 . Cre08g0546 . . . . . . . Cme03g00519 . Blo18g00178 . Bda01g01453 Bpe02g01649 . Bma01g00806 . . . . . . . Car15g00609 . . . . . . . . . . . . . . . . Lsi08g00454 . Chy03g00766 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008522 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00519 Cme_Chr03 FPKM 7.279361 6.551822 4.773302 5.657248 2.798367 2.605969 2.438301 13.162832 12.634945 13.41846