Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00522 ATGTCGATCTTTGAGTATAATGGAAGTGCTGTAGTTGCGATGGTGGGGAAGAATTGCTTTGCCATTGCCAGTGATCGTAGACTTGGTGTTCAGTTGCAGACTATTGCCACAGATTTCCAGAAAATTTACAGGATTCATGATAAGCTATTTCTTGGCCTTTCGGGGCTTGGTACCGATGCTCAGACACTGTTTGGTCCATATTTCTGCCAGCCTGTAATTGCTGGATTGAGTGATGAAGACAAACCCTTCATTTGCACGATGGATTCCATTGGGGCCAAATCTTGTGCAGTGCGGCCTGAGGCCGTTGCTGGCAGGCGAGAGCAAGAGGATAATAATAAGCAGCAGCAGCAGCAGCTTCCCCAAAGGATTTCTCTTGCTTATGTTGAACAGGTGAACACAGATTTGATCATGGCCTTGGCAATGCAGCAGCAGGAGCATGAGATGGCCTATACGACGCTCGAGACCATTGCAAGCGAAAGCGAAGAAGACGAAAGTTCAGATTCCAACAGCAATAATGGTCTCAATACAAATGCCGCCTCACAAAGGGAAGAACTTATATGCCGGTGGGCATTTCCGGATGAAAATGAATATATGGAAGGAAATGAAGATGGGGATTATGAGGGTTCTGATATGGATGAGCTAAATGAAGATATGGAAGAAGATGAAGATGGGGATTTCGAGGGTTTTGATCTGGATGAGCTAACTTATGAGGAGTTGATTGCATTAGGGGAGTTCATTGGGGAAGAAAAGAGGGGCCTACCGATAAACGAAATACCTTCATGCTTGCACTCGAGCAAGTTCCAAACCATCGAAAACAAAAGTGGAATAGATCGGTGTGTGATCTGCCAAGTTGAATATGATGACGGTGAAGAATTGGCTGCTCTTCCTTGTCAGCATCCTTATCATTCAGAATGTATAGGCGAATGGCTTCAAATCAAAAGGGTTTGTCCCATCTGTGGCACAGAAGTTTCATCCCCCAATGGTTCTAAAAATGAATGA 999 44.74 MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQKIYRIHDKLFLGLSGLGTDAQTLFGPYFCQPVIAGLSDEDKPFICTMDSIGAKSCAVRPEAVAGRREQEDNNKQQQQQLPQRISLAYVEQVNTDLIMALAMQQQEHEMAYTTLETIASESEEDESSDSNSNNGLNTNAASQREELICRWAFPDENEYMEGNEDGDYEGSDMDELNEDMEEDEDGDFEGFDLDELTYEELIALGEFIGEEKRGLPINEIPSCLHSSKFQTIENKSGIDRCVICQVEYDDGEELAALPCQHPYHSECIGEWLQIKRVCPICGTEVSSPNGSKNE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7834096 7839944 + MELO3C010635.2.1 Cme03g00522 322533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00522 332 MobiDBLite consensus disorder prediction 101 120 - -
Cme03g00522 332 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 94 IPR029055 -
Cme03g00522 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Cme03g00522 332 SUPERFAMILY RING/U-box 278 326 - -
Cme03g00522 332 MobiDBLite consensus disorder prediction 157 177 - -
Cme03g00522 332 Pfam Ring finger domain 278 319 IPR001841 -
Cme03g00522 332 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 65 IPR029055 -
Cme03g00522 332 Pfam Proteasome subunit 7 64 IPR001353 GO:0005839|GO:0051603
Cme03g00522 332 ProSitePatterns Proteasome beta-type subunits signature. 12 59 IPR016050 GO:0005839|GO:0051603
Cme03g00522 332 SMART ring_2 279 319 IPR001841 -
Cme03g00522 332 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 112 328 IPR033276 GO:0004842|GO:0016567|GO:0046621
Cme03g00522 332 ProSiteProfiles Zinc finger RING-type profile. 279 319 IPR001841 -
Cme03g00522 332 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 112 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00522 - - - csv:101217935 340.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00522 Cme-Chr3:7834096 Cme10g00788 Cme-Chr10:5129274 9.74E-30 dispersed
Cme03g00522 Cme-Chr3:7834096 Cme03g00523 Cme-Chr3:7834663 8.82E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g239 . . . . Bpe02g00636 . . Bma01g02077 Cmo04g02490 Cmo15g00672 . . . . Sed11g1620 . . Bhi04g01885 Tan11g1888 Cmetu03g0875 . Hepe02g2232 . . Cla08g00612 Cam08g1026 Cec08g0615 Cco08g0727 Clacu08g0736 . Cre08g0544 . . . Cone20ag0434 . . . Cme03g00522 . . . . . . . . . . . . . . . Cpe01g02064 . . . . . . . . . . . . . . . Lsi08g00452 . Chy03g00768 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007823 3 3 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00522 Cme_Chr03 FPKM 5.654708 6.505084 7.20973 6.848481 16.067204 13.463087 15.820425 10.646445 11.048721 10.942717