Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00540 ATGGAGTTGAAGAAAACAGAAGTTGAGGAGAAAGTACAACAACAACACCACCATTTCCATGTATTGGCTGTTGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTCAAGTTACCTGTGTTGAGTCTGGTGATAAAGCTCTTAGATATTTGGGCCTTCTTGATCATGATCTTGATCCATTTTCTTCTTCTTCATTTTCTTCCTCACAACTCTCCCAACATCAGGAAGTCAAAGTCAACCTAATCATGACAGATTTCTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAGCCATCAAGAATCAACATGTGTTTAGAGGAAGGGGCAGAGGAATTCCTTCTAAAGCCCCTTCAATTATCGGATGTCAAAAAGCTCGAGCCTCACCTTCAAAAATCTATCACCCGTTGTGCTTCTGATCAACAAATCAAGGAACAACAAACAACACTTGGAATTGGAATCGGAATCGCTATCGATGACGAAGAAAACTCGAAATTAGAAGAGAGTAAGAATAGCGTTAATAATAGTAGTAGTAGTAGTAATAATAACAACAACAATAATAATAGCTTGAGCAAAAGAAAGGCGGCAACTGCGGAGCATTGTGAAGAAAGATCACGACCAAAACTGAAAGAATTGCAAGCTGGAGGGTAA 732 38.8 MELKKTEVEEKVQQQHHHFHVLAVDDSLIDRKLLEKLLTISSCQVTCVESGDKALRYLGLLDHDLDPFSSSSFSSSQLSQHQEVKVNLIMTDFCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSITRCASDQQIKEQQTTLGIGIGIAIDDEENSKLEESKNSVNNSSSSSNNNNNNNNSLSKRKAATAEHCEERSRPKLKELQAGG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8082730 8095591 - MELO3C010624.2.1 Cme03g00540 322551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00540 243 Pfam Response regulator receiver domain 77 151 IPR001789 GO:0000160
Cme03g00540 243 SUPERFAMILY CheY-like 18 152 IPR011006 -
Cme03g00540 243 MobiDBLite consensus disorder prediction 196 221 - -
Cme03g00540 243 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 5 240 - -
Cme03g00540 243 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 240 IPR045279 GO:0009736
Cme03g00540 243 SMART REC_2 19 154 IPR001789 GO:0000160
Cme03g00540 243 MobiDBLite consensus disorder prediction 222 237 - -
Cme03g00540 243 ProSiteProfiles Response regulatory domain profile. 20 158 IPR001789 GO:0000160
Cme03g00540 243 CDD REC_typeA_ARR 21 153 - -
Cme03g00540 243 Gene3D - 20 240 - -
Cme03g00540 243 MobiDBLite consensus disorder prediction 191 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00540 Cme-Chr3:8082730 Cme09g01191 Cme-Chr9:16670479 2.22E-58 dispersed
Cme03g00540 Cme-Chr3:8082730 Cme10g00486 Cme-Chr10:3124244 4.06E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40993 PF00072 Response_reg 3.80E-15 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00540 K14492 - csv:101216267 387.111