Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00556 ATGACCGTCGTAGCAACGGCTGCTGCTCTCTCTTTGCCCATCTCTTTCTCTAAATCTCCCAAGCTAAATTTTAAGAAGAGTGTGAAAGGAGGATTTAGAGTGTTTGCTGTGTTTGGAGAGGAAGGAGCTATAGAAAGGAAGAGTGGCTGGGAAACGCTATTTGATGTGGAAGATCCCAGGACCAAGGTTCCTCAATGTAAAGGGAAGTTCTTAGATGTTAATCAAGCTCTTGAAGTGGCTAGATATGACATTCAGTATTGTGATTGGCGAGCTCGACAAGATGTTCTTGCAATCATGCTTCTCCATGAAAAGGTTGTGGAAGTTCTAAATCCTCTAGCCCGTGACTATAAATCTATCGGAACTATGAAGAAGGAGCTTGCTGGATTACAGGACGAATTAGCAGAAGCTCATAGACAGGTTCATATATCTGAAGCACGAGTTGCCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTGCATGATAGGCTATTACAAGACAGAAACACAGCAGAGTTGGATAGCCCATCGACCTTGCCTGGTACTTCAACACAATCTCATGATTCTGTAAATAGAAGATCGCCGAAGAAAAGCTTGAACGTTTCAGGACCTGTCGAACCATATAATCCCCGCTTGAAGAACTTCTGGTATCCTGTTGCTTTCTCCAGTGATCTGAAAGATGATATAATGATCCCATTTGATTGTTTTGAAGAACCATGGGTTCTTTTTCGTGGTAAGGATGGCAATCCTGGATGCATACGAAACACATGCGCTCATAGGGCATGCCCTCTTCACCTTGGTTCTGTCAATGATGGTCGAGTCCAGTGTCCTTACCATGGTTGGGAATATTCAACAGATGGGAAATGTGAGAAAATGCCTTCGACACGACTACTAAATGTGAAAATAAAGTCTTTGCCATGTTTCGAGAAAGAAGGAATGATCTGGGTTTGGCCAGGTAATGATCCTCCAGCAGCTAATCTTCCTTCTCTAAAACCTCCTCCTGGTTTTCAAATCCATGCTGAGCTCGTCATTGAAATTCCAGTGGAACACGGATTACTGCTAGATAACCTTCTGGATCTTGCTCATGCCCCTTTTACTCATACTTCTACTTTTGCTAAAGGATGGAGCGTACCCAGCTTGGTGAAATTTTTAACCCCTGCATCTGGGCTCCAAGGTTACTGGGACCCTTACCCTATAGACATGGAATTTCGACCACCTTGTATGGTGTTATCGACTATCGGTATCTCCAAACCAGGAAAACTAGAAGGCCAAAGTACCAGAGAGTGCTCGACACATCTTCATCAACTTCATGTGTGCTTACCTTCAACAAGACAGAAAACAAGACTATTGTACAGAATGTCACTGGATTTTGCCCCTGTGTTGAAGCAGATTCCCTTCATGCACTATCTCTGGAGACACTTTGCAGAACAGGTATTGAACGAGGACTTGAGGCTCGTCATTGGTCAGCAAGAGAGAATGGTCAACGGAGCAAATATTTGGAATATGCCGGTTTCTTACGATAAGCTAGGTGTAAGATACAGGTTATGGAGAAATGCAGTAGAAGAAGGAGCAAAACAATTACCATTCAGCCAATCAACTTGA 1605 43.18 MTVVATAAALSLPISFSKSPKLNFKKSVKGGFRVFAVFGEEGAIERKSGWETLFDVEDPRTKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLAIMLLHEKVVEVLNPLARDYKSIGTMKKELAGLQDELAEAHRQVHISEARVATALDKLAYMEELVHDRLLQDRNTAELDSPSTLPGTSTQSHDSVNRRSPKKSLNVSGPVEPYNPRLKNFWYPVAFSSDLKDDIMIPFDCFEEPWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLKPPPGFQIHAELVIEIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSTRQKTRLLYRMSLDFAPVLKQIPFMHYLWRHFAEQVLNEDLRLVIGQQERMVNGANIWNMPVSYDKLGVRYRLWRNAVEEGAKQLPFSQST 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8599248 8603842 - MELO3C010614.2.1 Cme03g00556 322567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00556 534 Gene3D - 335 528 - -
Cme03g00556 534 SUPERFAMILY ISP domain 210 320 IPR036922 GO:0051537
Cme03g00556 534 MobiDBLite consensus disorder prediction 171 206 - -
Cme03g00556 534 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 217 317 IPR017941 GO:0051537
Cme03g00556 534 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 72 532 - -
Cme03g00556 534 Gene3D - 211 333 IPR036922 GO:0051537
Cme03g00556 534 Pfam Vanillate O-demethylase oxygenase C-terminal domain 350 374 IPR044043 GO:0016491
Cme03g00556 534 Pfam Pheophorbide a oxygenase 404 497 IPR013626 GO:0010277
Cme03g00556 534 Coils Coil 119 146 - -
Cme03g00556 534 MobiDBLite consensus disorder prediction 171 190 - -
Cme03g00556 534 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 72 532 - -
Cme03g00556 534 SUPERFAMILY Bet v1-like 313 521 - -
Cme03g00556 534 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 258 280 IPR015881 GO:0005506|GO:0051537
Cme03g00556 534 CDD Rieske_RO_Alpha_Cao 200 328 - -
Cme03g00556 534 Pfam Rieske [2Fe-2S] domain 217 298 IPR017941 GO:0051537
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00556 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - csv:101205768 1087.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00556 Cme-Chr3:8599248 Cme07g00144 Cme-Chr7:924229 6.83E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00556 Cme_Chr03 FPKM 10.203428 11.938583 15.139135 14.779057 22.425755 16.840992 19.81477 23.248821 20.832411 22.798218