Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00560 ATGGAAAGAAGAAAATGGCCATGGAAGAGGAAGTCATCTGATAAGAGTCCTGGAGAAACTGAAAGTTCTGGTTCAATGTCATCGTATTCAGAGAGATTTTCCGACGAGCAGGATGCAGCCAAGTCATCTCCCAATCATGAGACTCAGTCTCCAGAAGTAACGTCAAAAGCGATATGTAAGGAAGAAGACATTGATGATGATTTGCCAAAACAAGAAGAGATCAACGATAGTGTGAAAAGTCTATCCGAGAGGTTATCAGCTGCTCTTGTAAATGTGAAGGCCAAAGAAGACTTGGTAAAGCAGCATGCTAAAGTTGCGGAAGAAGCTATCGCAGGATGGGAAAAGGCGGAAAATGAAGTTACACATCTAAAACAGCAGCTTGGGACTACAGTTCAGCAAAAGTCTGCCTTGGAAAATCGAGTGAGCCACCTTGATGGGGCCCTAAAAGAATGTGTTAGGCAGCTTAGGCAGGCAAGGGAGGAGCAGGAGCAGAAGATTCATGACGCGGTGGAGGAAAAAATCCGAGATTGGGAGTCCACCAAGGTGGATCTTGAGAGGCAGCTCCTAGCACTCCAGAGCAAAGCAGATACTGCTAAATGCGAATCTCCTAAAGTTGATCCTAGCATTGGCAAGAGGCTTGAGTTATTGAAAAGAGAGAATGCAGCCCTCAGGCATGAGCTTCATGCTCAATATAGGGAATTAGAAACGAGGACTATTGAGAGGGATTTGAGTACACAAACAGCTGAAACAGCCAGTAAGCAGCATCTTGAGAGCATAAAGAAAATGGCCAAGCTCGAGGCTGAGTGTCGCAGGTTAAAGTTTATGTCATGCAAACCATCATTGGTAGATCACAAATCCATAGCTGCTTCGACGATCTCTATCGAGTCACTTACCGACACTCAATCAGATAATGGGGAGCAGCTTAGTGCAGTGGATATTGAAATAAGAACCGAACGAAACAAAGGCGAGCCTAGCTGCTCACATCCACGGGCATCAACCTTACTTGCAGAACTCAATCAGCTTGGGAATGAAAAGCCCGTTAGCAGTAATCTTCCGTCTTCTCTTGAACTTGATCTCATGGATGATTTTCTTGAGATGGAAAGGCTTGCTTCGTTACCTGAAACTGATACTGGAAAGAGTCGTCAAGAATCAGAAGCTTTCCCTCGTTCTACTGCAGAAGAAAATGCACTAAGAACGGAGCTTGAGGCCTTGCGGCATGAGAGATCCCTAATGGAGGAGAAGCTGGGTGAGATGGAGGAAGCGAAGATTGAATTGGAAGAGAAGCTGAAACAAATGGAAGTGGAAAAGGATGAATTGGAAGAGAGGCTGGAGATGATGGAAATAGAGAGAGATGAAGCGAATCAAATGTTGGCAAAAATGGAGACCGAACAATACAAATTGGGGCAAGAGTTGGTGAAGATGGAAGAAGAGAAAGTTGAAATGGGAGAGAAATTAATGAAGTTGGAGACACAGAAAGATGAACTGGAGACTGCTCTATCCCGAAGTCAGAACTCTGTTGAGCTTTCACAATTTCAGCTCAAGGAAACACAAATGAAACTGGAAAAGTTACAGAATGAACTCACCGTTGGAAATGAATCAAAGTTAAGAATTGAGTCTCAACTTATCAGCATGGAAGCAGAATCTCTGACCATGTCTGCGAAAGTTGAGATGTTGGAATCTGATATTCAAAAAGAGAGGGCTTCAGCAATGGCATTGACTGTCAAGTGTCAGGTACTGGAAGAGGAGCTTTCAAGATTGAAACAGGATGAAAAGCTATCACAAAGTGAAATCTCCAAAAATGAGTTGAAGATAAAGCAGGAGGATCTAGCAGTAGCTGCTGGGAAACTTGCTGAGTGTCAAAAGACAATTGCATCTCTTGGGAATCAACTTAAATCTCTAGCTGCACTTGAAGATTTTCTTATCGATACGACACATCTACCGGAGTTCACAGCCAGTGAATCTCTAAGCATCACTATAGATGGTGAGGAGCAATGCAAGCATCCGTACGGAACACTTTCACCCAAAAGAGATTCAGACTTTACTAAAGTAGTTGATGACAATTCTGAACCATTAATGAGTAAGAATGGAGACGACTCGCCCCCTTTATCATCTTCTTCAACTTCATCATCTATGATAACAAGTCATGTTGTCAATTCTGAAAAAAACCGAAATGGTTTTGCAAAGTTTTTCTCACGAACCAAGAGTGGGATAAAACTAGAAATATAG 2226 42.86 MERRKWPWKRKSSDKSPGETESSGSMSSYSERFSDEQDAAKSSPNHETQSPEVTSKAICKEEDIDDDLPKQEEINDSVKSLSERLSAALVNVKAKEDLVKQHAKVAEEAIAGWEKAENEVTHLKQQLGTTVQQKSALENRVSHLDGALKECVRQLRQAREEQEQKIHDAVEEKIRDWESTKVDLERQLLALQSKADTAKCESPKVDPSIGKRLELLKRENAALRHELHAQYRELETRTIERDLSTQTAETASKQHLESIKKMAKLEAECRRLKFMSCKPSLVDHKSIAASTISIESLTDTQSDNGEQLSAVDIEIRTERNKGEPSCSHPRASTLLAELNQLGNEKPVSSNLPSSLELDLMDDFLEMERLASLPETDTGKSRQESEAFPRSTAEENALRTELEALRHERSLMEEKLGEMEEAKIELEEKLKQMEVEKDELEERLEMMEIERDEANQMLAKMETEQYKLGQELVKMEEEKVEMGEKLMKLETQKDELETALSRSQNSVELSQFQLKETQMKLEKLQNELTVGNESKLRIESQLISMEAESLTMSAKVEMLESDIQKERASAMALTVKCQVLEEELSRLKQDEKLSQSEISKNELKIKQEDLAVAAGKLAECQKTIASLGNQLKSLAALEDFLIDTTHLPEFTASESLSITIDGEEQCKHPYGTLSPKRDSDFTKVVDDNSEPLMSKNGDDSPPLSSSSTSSSMITSHVVNSEKNRNGFAKFFSRTKSGIKLEI 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8633154 8637954 - MELO3C010611.2.1 Cme03g00560 322571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00560 741 MobiDBLite consensus disorder prediction 18 33 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 693 715 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 1 75 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 371 393 - -
Cme03g00560 741 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 1 740 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 56 75 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 371 388 - -
Cme03g00560 741 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 740 - -
Cme03g00560 741 Coils Coil 394 533 - -
Cme03g00560 741 Coils Coil 569 596 - -
Cme03g00560 741 Coils Coil 141 201 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 685 715 - -
Cme03g00560 741 Coils Coil 213 233 - -
Cme03g00560 741 MobiDBLite consensus disorder prediction 1 17 - -
Cme03g00560 741 Pfam Filament-like plant protein, long coiled-coil 323 384 IPR008587 -
Cme03g00560 741 Pfam Filament-like plant protein, long coiled-coil 462 635 IPR008587 -
Cme03g00560 741 Pfam Filament-like plant protein, long coiled-coil 95 216 IPR008587 -
Cme03g00560 741 Pfam Filament-like plant protein, long coiled-coil 211 275 IPR008587 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00560 - - - csv:101206243 1297.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00560 Cme-Chr3:8633154 Cme04g00482 Cme-Chr4:3821592 3.83E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00560 Cme_Chr03 FPKM 2.603631 3.862161 6.395215 5.244286 2.296761 2.136874 2.756136 46.133713 43.178776 43.680794