Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00563 ATGGCGGCTCAAACCATGCTCCTCACTTCTGGTGTGTGCGTCGGCCATGGTGTGTGTCTCAAAAGAGAATTGAGCCTTAGACCTAACAACAACCAATTTACTCGTCTCTTTTTCAATCCTCTGCCGAACCATTCTGTTTCTTTACCGGCGCGTGGTTTCACCCCTCTTGCTGTGTTCAAATCCAGAACTAAAGCCCCGCCCAAGAAGGTTGAGAAGCCGAAGCAGAAGGTTGAAGATGGAATTTTTGGGACTTCTGGTGGCATTGGTTTTACCAAGCAGAATGAACTCTTCGTCGGCCGTGTTGCTATGATCGGCTTTGCTGCATCATTGCTAGGAGAGGCGATCACCGGAAAGGGAATTCTAGCTCAACTCAACTTAGAAACTGGAATTCCCATTTACGAGGCCGAGCCTCTTCTTCTCTTCTTCATCTTATTCACTCTTCTCGGAGCCATCGGAGCCCTAGGAGACCGTGGAAAATTCATCGACGATCCTGAACCCGCCACTGGATTGGAACGCGCCGTCATTCCTCCCGGAAAGAGCTTCAGATCGGCCTTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACCAAGGCCAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGTTGATCGGAGAAATTATTACAGGAAAGGGAGCTTTGGCGCAATTGAACATCGAGACGGGAGTGCCGATCAATGAGATTGAGCCTCTGGTTTTGTTGAATGTTGTGTTCTTCTTCATTGCGGCGGTGAATCCTGGAACTGGTAAATTCGTGACGGATGAAGAAGATGATGAATGA 819 49.08 MAAQTMLLTSGVCVGHGVCLKRELSLRPNNNQFTRLFFNPLPNHSVSLPARGFTPLAVFKSRTKAPPKKVEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDDE 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8711437 8713977 + MELO3C010608.2.1 Cme03g00563 322574

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00563 272 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 194 257 - -
Cme03g00563 272 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 3 184 - -
Cme03g00563 272 SUPERFAMILY Chlorophyll a-b binding protein 76 250 - -
Cme03g00563 272 Gene3D Chlorophyll a/b binding protein domain 32 133 - -
Cme03g00563 272 Gene3D Chlorophyll a/b binding protein domain 134 244 - -
Cme03g00563 272 Pfam Chlorophyll A-B binding protein 51 216 IPR022796 -
Cme03g00563 272 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 3 184 - -
Cme03g00563 272 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 194 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00563 K03542 psbS; photosystem II 22kDa protein - csv:101206477 496.123
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g264 Blo01g01295 . . . Bpe02g00643 . . Bma01g02070 Cmo04g02470 Cmo15g00693 . . . . Sed01g3127 . . Bhi04g01917 Tan11g1281 Cmetu03g0812 . Hepe02g2274 . Lcy10g1223 Cla08g00587 Cam08g1002 Cec08g0591 Cco08g0701 Clacu08g0711 . Cre08g0522 Cone4ag1409 Cone7ag1531 . . . . . Cme03g00563 . . . . . . . . . . . . . Car04g02287 Car15g00626 Cpe01g02049 . . . . . . . . . . . . . . . Lsi08g00433 . Chy03g00803 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009327 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00563 Cme_Chr03 FPKM 6.080269 6.068436 16.412149 16.446819 15.167524 15.072569 14.508237 5.175588 4.646496 4.534074