Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00572 ATGGCGGAGGAATTACAAGGCAACGATGCTCTCAAAGAAGAACCCATGGATGTAGCTGTTGATATAGAGACGAAGATTCATAACGCTATGCGCTCTCGCATCTCTCACTTCAAGGAACAAGCCGACTCTTTGACATTTGAGGGGGTTAGAAGATTGTTGGAAAAGGACTTGTGTATGGAGACGTATACTTTAGATGTACACAAAAGATATGTCAAGCAGTGTTTGGTGAAGTGCTTAGAAGCTGATTTGGAAGACAATGTATCCAAGGATTCTGAGTTGACAGGGAGAAAAAGTGTAAATAAAGAAGAAATGCCTGAGTCACCTGAAGGGCATCAGTCCAAGAAAGGTGCAAAGGAACCTTGCTTGGAAGATGAGGAAAAACTGGAAGACTCTCCAGTTATGGGCCTTCTCACAGGACGTAGCACAAAAAATGTTGAATCTGATGGAATCAAAGGAATCAAAGGCAAAGATGACAAAGATGTTCCTAGTGAGAGTACAATTATGAAAGCGATTAGAAAAAGAACTTCTTATCTTAAAGCTAATTCAGAGAAAGTTACTATGGCTGGAGTTCGCCGCCTTCTGGAGGATGACCTTAAACTTACTAAAAATGCTCTCGACAGTTGTAAGAAGTTGATAAGCCAACAAGTAGAGGAGGTTAGCAAAGAAAGCTCTCATTCTACTGAAGGGAGCAGCAGTGAGGAGGAAAACGATGAGGTAAACCCTGGAAAGACAAATGCAACTAAAGGAAGAATACTGGACTCTAATGAAACAAAAAAGCGGAAAAGGTCTACAAAGAAGAACGTCTCTGCCAAGAAGCAAAGGAAGCATGTCCAGGATACATCAGATGAGGATAGTGATGAAGGTGGTGAAAATGTCTCTGAAGATGATCAGTCTGGTTCATCCAATGAAAAACCTGTGAAGAAGGAAGTTTCAAGTTCAACTCCTGTCTATGGCAAGCGCGTGGAGCACTTGAAATCTGTTATCAAATCATGTGGGATGAGTGTTCCTCCATCGATTTATAAGAAAGTCAAGCAGGCACCTGAAAGCAAACGTGAATCACAACTTATAAAGGAGTTGGAGGGGATACTATCCAGAGAAGGACTGTCTGCTAATCCCACGGAAAAAGAAATTAAGGAAGTCAAAAAGAAGAAGGAAAGGGCCAAAGAACTTGAAGGCATCGACTTAAGTAATATTGTCTCAAGTTCACGTAGAAGATCAACAACCAGTTATGTTGCACCACCTCCAAAACCGAAAATACCAGTTAAAACTGATGGCGATGATGCAGATGATACTGATGACGATGAAGAGGAGGATGATGAAGAAGAAGAAGACGACGATGAAGAAGAAGAGGACGGTGAGGAAGAGGAGGATAATGGCGATGTTGATGAAAGCCAAGGTGAAGAATTTAACGAGGATGACAATGAAGACAGTGATTGA 1437 41.54 MAEELQGNDALKEEPMDVAVDIETKIHNAMRSRISHFKEQADSLTFEGVRRLLEKDLCMETYTLDVHKRYVKQCLVKCLEADLEDNVSKDSELTGRKSVNKEEMPESPEGHQSKKGAKEPCLEDEEKLEDSPVMGLLTGRSTKNVESDGIKGIKGKDDKDVPSESTIMKAIRKRTSYLKANSEKVTMAGVRRLLEDDLKLTKNALDSCKKLISQQVEEVSKESSHSTEGSSSEEENDEVNPGKTNATKGRILDSNETKKRKRSTKKNVSAKKQRKHVQDTSDEDSDEGGENVSEDDQSGSSNEKPVKKEVSSSTPVYGKRVEHLKSVIKSCGMSVPPSIYKKVKQAPESKRESQLIKELEGILSREGLSANPTEKEIKEVKKKKERAKELEGIDLSNIVSSSRRRSTTSYVAPPPKPKIPVKTDGDDADDTDDDEEEDDEEEEDDDEEEEDGEEEEDNGDVDESQGEEFNEDDNEDSD 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8898536 8909838 + MELO3C010600.2.1 Cme03g00572 322583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00572 478 SMART CHZ_2 384 419 IPR019098 -
Cme03g00572 478 MobiDBLite consensus disorder prediction 395 409 - -
Cme03g00572 478 Coils Coil 370 390 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 221 241 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 214 318 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 147 166 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 370 478 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 371 392 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 87 166 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 87 131 - -
Cme03g00572 478 MobiDBLite consensus disorder prediction 294 309 - -
Cme03g00572 478 Pfam Histone chaperone domain CHZ 385 415 IPR019098 -
Cme03g00572 478 MobiDBLite consensus disorder prediction 426 478 - -
Cme03g00572 478 PANTHER HIRA-INTERACTING PROTEIN 3 1 464 IPR037647 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00572 - - - csv:101217045 694.501
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011404 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00572 Cme_Chr03 FPKM 596.080139 657.407654 426.173492 439.61441 167.108307 135.021637 155.744446 513.651001 597.805115 522.768188