Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00573 ATGATTCGGCATTTATCGTCTTCTGCCCTTTACCAATTGGAAAAAAGCTCGCCTCTGGCCCCCGCATTTTCCCTCCGCATTGGAGCGGAAATAGGACTGAACACACGCCGGAAAATTGCGGACGTTCTAAGAAAAGTCAGACCAAAAATGGTGATGTGGGTATTCGGGTACGGCTCTCTTATTTGGAAAACTGGATTTCCTTTTGACCAAAAATTACCTGGCTGTATCAAAGGCTACCGCCGTGTCTTCTATCAAGGAAGTACTGATCATAGAGGAACTCCTGAATTTCCTGGAAGAACTGTGACATTGGAGGCTGCGGAAGGGGAAGTTTGTTGGGGTGTTGCTTACAAGATCACCAAAAAGGAGGATAAAGAAACTGCATTAAATCATTTGGAAGTGAGGGAGAAACAATATGATAGGAAAGAATATGTCGATTTTTTCACCGACCCCTTGGATACCACCCCTATTGTTTCTGGAGTAATGGTGTATGTTGCATCTCCAGACAAGAAGCTAAACAAGAATTACCTTGGCCCTGCATCTATCGAGGAGATTGCCAAACAGGTAGTTCATGCGGAAGGGCCCTCAGGACCAAACAAGGACTATATTTTTCAACTCGAAAAGGCTCTTCTTCAGTTTGGATGGTATGATAAACATGTAAACGATCTAGCAAATGAAGTTAGAAGCCTTCTTTCAGATGGGAAGCTGACTGCTGCTTAG 717 43.93 MIRHLSSSALYQLEKSSPLAPAFSLRIGAEIGLNTRRKIADVLRKVRPKMVMWVFGYGSLIWKTGFPFDQKLPGCIKGYRRVFYQGSTDHRGTPEFPGRTVTLEAAEGEVCWGVAYKITKKEDKETALNHLEVREKQYDRKEYVDFFTDPLDTTPIVSGVMVYVASPDKKLNKNYLGPASIEEIAKQVVHAEGPSGPNKDYIFQLEKALLQFGWYDKHVNDLANEVRSLLSDGKLTAA 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8909889 8913336 - MELO3C010599.2.1 Cme03g00573 322584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00573 238 PANTHER GLUTATHIONE-SPECIFIC GAMMA-GLUTAMYLCYCLOTRANSFERASE 1 45 233 - -
Cme03g00573 238 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 50 147 IPR036568 -
Cme03g00573 238 CDD GGCT_like 54 165 IPR013024 -
Cme03g00573 238 Pfam ChaC-like protein 52 228 IPR006840 GO:0003839|GO:0006751
Cme03g00573 238 Gene3D - 45 234 - -
Cme03g00573 238 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 45 233 IPR006840 GO:0003839|GO:0006751
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00573 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101217290 378.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00573 Cme-Chr3:8909889 Cme03g01710 Cme-Chr3:25726925 6.91E-65 dispersed
Cme03g00573 Cme-Chr3:8909889 Cme04g00317 Cme-Chr4:2482557 1.82E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g283 . . . . . . . . Cmo04g02465 . . . . . . . . Bhi04g01928 Tan11g1292 . . Hepe02g2283 . . Cla08g00579 Cam08g0994 Cec08g0583 Cco08g0693 Clacu08g0703 . Cre08g0514 Cone4ag1396 Cone7ag1541 . . . . . Cme03g00573 . . . Bda13g01484 . Bpe14g00379 . Bma02g00221 . . . . . Car04g02282 . Cpe01g02044 . . . . . . . . . . . . . . . Lsi08g00423 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008545 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00573 Cme_Chr03 FPKM 11.850751 12.655704 11.607998 12.400969 3.234112 2.937328 3.357441 21.596228 21.270069 21.961908