Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00587 ATGTCCCGATCGCTGGTGCAGCCTATCGGGCAGAAGCGGCTGACCAACGTCGCCGTGGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAAAGACTTGGATGAGGTTTTGCAGTCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAAGATTTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTAATGCGTGAAATTCATTTTGCTGTCGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTTCAGAAACAATTCCCAATTAAACGGTCACCTATGAGGTTACGATATATTGTACCTGAACAGAACGTCCCTTCTCTTCTTGATAAGTTAAATGCTTGGAGTGCTAGTATTGTTTCCAATGACCAGTCTGGAAATCAGCAACGAAGCATAATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGCAATCCACTAATGAGTGAACTACATGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGAGACACCAATGTGGATCAATACGAGGACGATTATGAGAATGTGGAACTGCTACCAAGGCAATTAAAGGAAACAGAATCGTCTATTCCTCAGCTAAGTGAAGCTTTACAAAAGCAGACAATTTCTGTCAACAGTGATAACGCCCCAAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGCCGTGGGAGATGCTACAAAGTTTAGAGAGCATCACAAGAGTGATTGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTCTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGATTCAGAGTCTGACCTGAAGGAGTATTCATTTTGA 1080 42.59 MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIVPEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFYRDCNPLMSELHGRFEVLSFCLHEEGDTNVDQYEDDYENVELLPRQLKETESSIPQLSEALQKQTISVNSDNAPKEGKRCSTCNVAVGDATKFREHHKSDWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKEYSF 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9225937 9228989 - MELO3C010584.2.1 Cme03g00587 322598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00587 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cme03g00587 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cme03g00587 359 Gene3D - 1 96 IPR036786 -
Cme03g00587 359 Gene3D - 100 172 IPR037188 -
Cme03g00587 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 231 IPR002140 GO:0042256
Cme03g00587 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cme03g00587 359 SUPERFAMILY beta-beta-alpha zinc fingers 286 328 IPR036236 -
Cme03g00587 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Cme03g00587 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Cme03g00587 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Cme03g00587 359 Gene3D - 174 251 - -
Cme03g00587 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Cme03g00587 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00587 K14574 - csv:101215380 700.279