Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00617 ATGTCGTTTCGTAGTATAGTTCGTGATGTTAGAGAGGGGTTTGGAAGTTTATCCAGGCGTAGTTTTGAGGTAAGACTGCCTGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATCTGCACGACCAACCTCTGGTAATTCAAACCAGTCGTTGGGCTAGTCTCCCACCTGAGCTATTGCGGGATGTAGTTACGAGACTGGAGGAGAGTGAGAGTGTGTGGCCTGCTCGAAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTCAAAAGTCCGGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCCTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAGTGCTTTATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTCTGCCTAAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACAACCTGCACTGAATATGTGATCTCCATGGATGCAGATAATATATCAAGATCAAGCAACACCTACATTGGAAAACTAAGGTCAAATTTTCTTGGGACCAAGTTCATTATTTATGATACACAGCCTCCATATAACAATGCCCAGATTTCCCCACCTGGCCGTAGCCGTAGATTGTACTCAAAGAAAGTTTCTCCAAAAGTCCCAACTGGTAGCTATGACATTGCTCAAGTCACTTATGAACTGAATGTTCTTGGCACAAGAGGCCCTCGAAAGATGCACTGCACAATGCACTCCATCCCTGCCTCATCTCTGGAGGCTGGTGGTACCGTTCCAGGCCAGCCCGAGGTTGTATCTCGACTCCTTGGGGATTCGTTTCGAAGCATATCATTCTCCAAGTCTGTCTTCAACTCTACAGAGTTCAGTAGTTCTCGTTTCTCTGACATTGTTGGCTCTCGAGACGAAGATGAGACAGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCGCCACGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACTGTTGCCTCTGTCAAAAACTTTCAACTCATAGCCGCCACAGAGCCTTCTTCAACAGCTACAAACCAATCGCAGCCAAACCAACATGGCCAGTCCTCCCAATCGGACTATGACAAGATCATTCTTCAATTTGGAAAGGTTGGGAAAGATATGTTTACCATGGATTACCGGTATCCATTGTCCGCATTTCAAGCTTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1293 45.71 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQTSRWASLPPELLRDVVTRLEESESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRLYSKKVSPKVPTGSYDIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVSRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSRDEDETGKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSTATNQSQPNQHGQSSQSDYDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10036402 10039993 + MELO3C011685.2.1 Cme03g00617 322628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00617 430 Gene3D - 48 101 - -
Cme03g00617 430 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cme03g00617 430 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 430 - -
Cme03g00617 430 Gene3D Tubby Protein; Chain A 112 424 IPR025659 -
Cme03g00617 430 Pfam Tub family 114 425 IPR000007 -
Cme03g00617 430 PANTHER TUBBY-RELATED 1 430 - -
Cme03g00617 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Cme03g00617 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Cme03g00617 430 MobiDBLite consensus disorder prediction 366 385 - -
Cme03g00617 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Cme03g00617 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cme03g00617 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cme03g00617 430 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cme03g00617 430 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cme03g00617 430 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cme03g00617 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Cme03g00617 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Cme03g00617 430 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00315 Cme-Chr3:3994795 Cme03g00617 Cme-Chr3:10036402 0 dispersed
Cme03g00617 Cme-Chr3:10036402 Cme06g01306 Cme-Chr6:10907911 0 dispersed
Cme03g00617 Cme-Chr3:10036402 Cme06g00687 Cme-Chr6:4481950 9.17E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40997 PF01167 Tub 9.70E-118 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00617 K19600 - csv:101206041 857.055