Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00621 ATGGATGTCGTCGACCCCGGGGAGGCAGCAGTGACGACCGAAGCGGTAGATGCTCATGAAGTTGGGGACAGCGGTGGCGGCGGTAGCGGAAACGGATCGAATTCCGGCGAAGAAGAAAAGGGGTCATCTTTATTGTTGTTTGAAGATGGTGAGAAGAACTTTGGTGGGAACCGATGGCCAAGACAAGAAACTCTGGCTTTGTTGAAGATAAGATCTGATATGGATACAATTTTTAGAGATGCAACTCATAAAGCTCCATTATGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAATATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCGGATGAATTGGAGGCTTTTGATCATCCTACTAGCCAACACCAAAATCACATGTTATTTCAATCTCACCACCGCCACCCTTCACCTCCACCGCCACCGCCAGTTCTTCCTACAACGACGCCACCGCCGTCTTTCAACCCTCCAGCACCTAAAACAATCAACTCTACTGTTCCATCCACCATGAATAACATTACGACAAACAACAAGTACTCCTTGCCACCAAAGTCCTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCCGCCAATGTGATATTTTCTAGCTCAACGTCATCATCGACAGCATCGGAGGAAGATCCGTTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGAAAGTGGAGTGATTTCTTCTTGAGGTTGACAAAGGAAGTAATAGAGAAGCAAGAAGGGCTTCAACTAAAATTCTTAGAAGCTTTAGAGAGAATAGAGAATCAAAGAAAATTGAGAGATGAAGCATGGAGAACGAAAGAGATGACAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAAATGTCCATGGCTGCTGCCAAAGACGCAGCAGTCGTCGCATTTTTACAAAAGATAGCTCCTTCTTCTCCACCAGTGCCAGTACCACCACCACTACCGATGACGATGACGACTCAACTACAAAACGGCGAGAATAATGGAAAGTTGAGCTCCACTATTGGAAGCCATGTAATCTCGACGACGACGACAAATGGAAAGGTGATGAGTAGCATTATTGTAGGAAGCCCATCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGGCTAAGGACAGAAATGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAAGAGATTTCATCAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATATTTCAAAAAGGTTAAATATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTACTTTCACCAATTGGATGCTCTTTATAGAGAGAAAGAGAAAAGTAATATGAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTGCATTTCAACCCAATAATCAAGTCATGGGAAATAATTTACAGAGAATAAATGGTGAAGCAAATCAAGAAGAAGAAGAAGATGATCATGGTGATGATGATGATAATGATGATGATGTCGAAGAAGAAGATATTGGAGGAAGTAGTAGCACAGATGTAGAAGATTGA 1692 41.55 MDVVDPGEAAVTTEAVDAHEVGDSGGGGSGNGSNSGEEEKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDTIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHPTSQHQNHMLFQSHHRHPSPPPPPPVLPTTTPPPSFNPPAPKTINSTVPSTMNNITTNNKYSLPPKSSNNPLSNLPNMAANVIFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRTKEMTRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSSPPVPVPPPLPMTMTTQLQNGENNGKLSSTIGSHVISTTTTNGKVMSSIIVGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKRPEDSKTCPYFHQLDALYREKEKSNMNFDINSQMEPLMVEPEQQWPPAFQPNNQVMGNNLQRINGEANQEEEEDDHGDDDDNDDDVEEEDIGGSSSTDVED 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10194329 10197119 - MELO3C011683.2.1 Cme03g00621 322632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00621 563 MobiDBLite consensus disorder prediction 530 563 - -
Cme03g00621 563 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 12 552 - -
Cme03g00621 563 ProSiteProfiles Myb-like domain profile. 392 450 IPR001005 -
Cme03g00621 563 PANTHER - 12 552 - -
Cme03g00621 563 ProSiteProfiles Myb-like domain profile. 51 115 IPR001005 -
Cme03g00621 563 CDD GT1 57 122 - -
Cme03g00621 563 MobiDBLite consensus disorder prediction 157 221 - -
Cme03g00621 563 SMART sant 55 117 IPR001005 -
Cme03g00621 563 SMART sant 390 452 IPR001005 -
Cme03g00621 563 MobiDBLite consensus disorder prediction 233 253 - -
Cme03g00621 563 Pfam Myb/SANT-like DNA-binding domain 392 479 IPR044822 -
Cme03g00621 563 Pfam Myb/SANT-like DNA-binding domain 57 138 IPR044822 -
Cme03g00621 563 MobiDBLite consensus disorder prediction 1 41 - -
Cme03g00621 563 CDD GT1 392 457 - -
Cme03g00621 563 MobiDBLite consensus disorder prediction 163 187 - -
Cme03g00621 563 MobiDBLite consensus disorder prediction 506 563 - -
Cme03g00621 563 MobiDBLite consensus disorder prediction 508 527 - -
Cme03g00621 563 Gene3D - 394 455 - -
Cme03g00621 563 Gene3D - 59 120 - -
Cme03g00621 563 Coils Coil 515 535 - -
Cme03g00621 563 MobiDBLite consensus disorder prediction 188 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00621 Cme-Chr3:10194329 Cme11g00078 Cme-Chr11:629359 1.44E-124 dispersed
Cme04g02727 Cme-Chr4:32646707 Cme03g00621 Cme-Chr3:10194329 3.51E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40998 PF13837 Myb_DNA-bind_4 9.20E-22 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00621 - - csv:101207491 884.404