Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g00621 | ATGGATGTCGTCGACCCCGGGGAGGCAGCAGTGACGACCGAAGCGGTAGATGCTCATGAAGTTGGGGACAGCGGTGGCGGCGGTAGCGGAAACGGATCGAATTCCGGCGAAGAAGAAAAGGGGTCATCTTTATTGTTGTTTGAAGATGGTGAGAAGAACTTTGGTGGGAACCGATGGCCAAGACAAGAAACTCTGGCTTTGTTGAAGATAAGATCTGATATGGATACAATTTTTAGAGATGCAACTCATAAAGCTCCATTATGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTATAAATATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCGGATGAATTGGAGGCTTTTGATCATCCTACTAGCCAACACCAAAATCACATGTTATTTCAATCTCACCACCGCCACCCTTCACCTCCACCGCCACCGCCAGTTCTTCCTACAACGACGCCACCGCCGTCTTTCAACCCTCCAGCACCTAAAACAATCAACTCTACTGTTCCATCCACCATGAATAACATTACGACAAACAACAAGTACTCCTTGCCACCAAAGTCCTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCCGCCAATGTGATATTTTCTAGCTCAACGTCATCATCGACAGCATCGGAGGAAGATCCGTTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGAAAGTGGAGTGATTTCTTCTTGAGGTTGACAAAGGAAGTAATAGAGAAGCAAGAAGGGCTTCAACTAAAATTCTTAGAAGCTTTAGAGAGAATAGAGAATCAAAGAAAATTGAGAGATGAAGCATGGAGAACGAAAGAGATGACAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAAATGTCCATGGCTGCTGCCAAAGACGCAGCAGTCGTCGCATTTTTACAAAAGATAGCTCCTTCTTCTCCACCAGTGCCAGTACCACCACCACTACCGATGACGATGACGACTCAACTACAAAACGGCGAGAATAATGGAAAGTTGAGCTCCACTATTGGAAGCCATGTAATCTCGACGACGACGACAAATGGAAAGGTGATGAGTAGCATTATTGTAGGAAGCCCATCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGGCTAAGGACAGAAATGGAAATGAAGTATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAAGAGATTTCATCAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATATTTCAAAAAGGTTAAATATAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCTTACTTTCACCAATTGGATGCTCTTTATAGAGAGAAAGAGAAAAGTAATATGAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTGCATTTCAACCCAATAATCAAGTCATGGGAAATAATTTACAGAGAATAAATGGTGAAGCAAATCAAGAAGAAGAAGAAGATGATCATGGTGATGATGATGATAATGATGATGATGTCGAAGAAGAAGATATTGGAGGAAGTAGTAGCACAGATGTAGAAGATTGA | 1692 | 41.55 | MDVVDPGEAAVTTEAVDAHEVGDSGGGGSGNGSNSGEEEKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDTIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHPTSQHQNHMLFQSHHRHPSPPPPPPVLPTTTPPPSFNPPAPKTINSTVPSTMNNITTNNKYSLPPKSSNNPLSNLPNMAANVIFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRTKEMTRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSSPPVPVPPPLPMTMTTQLQNGENNGKLSSTIGSHVISTTTTNGKVMSSIIVGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISSAMRGLGYNRSSKRCKEKWENINKYFKKVKYSNKKRPEDSKTCPYFHQLDALYREKEKSNMNFDINSQMEPLMVEPEQQWPPAFQPNNQVMGNNLQRINGEANQEEEEDDHGDDDDNDDDVEEEDIGGSSSTDVED | 563 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10194329 | 10197119 | - | MELO3C011683.2.1 | Cme03g00621 | 322632 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 530 | 563 | - | - | |
Cme03g00621 | 563 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-2 | 12 | 552 | - | - | |
Cme03g00621 | 563 | ProSiteProfiles | Myb-like domain profile. | 392 | 450 | IPR001005 | - | |
Cme03g00621 | 563 | PANTHER | - | 12 | 552 | - | - | |
Cme03g00621 | 563 | ProSiteProfiles | Myb-like domain profile. | 51 | 115 | IPR001005 | - | |
Cme03g00621 | 563 | CDD | GT1 | 57 | 122 | - | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 157 | 221 | - | - | |
Cme03g00621 | 563 | SMART | sant | 55 | 117 | IPR001005 | - | |
Cme03g00621 | 563 | SMART | sant | 390 | 452 | IPR001005 | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 233 | 253 | - | - | |
Cme03g00621 | 563 | Pfam | Myb/SANT-like DNA-binding domain | 392 | 479 | IPR044822 | - | |
Cme03g00621 | 563 | Pfam | Myb/SANT-like DNA-binding domain | 57 | 138 | IPR044822 | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Cme03g00621 | 563 | CDD | GT1 | 392 | 457 | - | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 163 | 187 | - | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 506 | 563 | - | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 508 | 527 | - | - | |
Cme03g00621 | 563 | Gene3D | - | 394 | 455 | - | - | |
Cme03g00621 | 563 | Gene3D | - | 59 | 120 | - | - | |
Cme03g00621 | 563 | Coils | Coil | 515 | 535 | - | - | |
Cme03g00621 | 563 | MobiDBLite | consensus disorder prediction | 188 | 221 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g00621 | Cme-Chr3:10194329 | Cme11g00078 | Cme-Chr11:629359 | 1.44E-124 | dispersed | |
Cme04g02727 | Cme-Chr4:32646707 | Cme03g00621 | Cme-Chr3:10194329 | 3.51E-07 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40998 | PF13837 | Myb_DNA-bind_4 | 9.20E-22 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g00621 | - | - | csv:101207491 | 884.404 |