Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00666 TTTATTTCTTTTTCTTCTCTCTCTCTCTCTTTCTCTCAGAAACCAAAACCAAAACCAAAACCCCACTTTGATTCTCTCTCATCCCTCATCTTTCTCCTCTCTTTCTCTCTCCTTTACCGACCCCCTCAAGAATTTCCATTCCCTCTCTTCTCCCAATTTATCGCCATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTATGGGTTATTACTCCGATGACGATGACCCTGATGCTGAGGATTTCGTCGATGATGATACCGATGATTACTTCGAGGCCAGCAGACGCGAGCAAAATTACACAATACTAAATGAGTCGGACATAAGACAACGGCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATTTGTTTCGAATCCTATCCAAATAATAGGATCAAGTCAGCTGCCTGTGGTCACCCTTTCTGCGTCTTCTGCTGGGAAGGCTACGTTAGCACATCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTCGATCAAGACATGATTAATTCATTGGCCTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGCATGCTGTTCTCTTTGACGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAGAATATGAACTGGATATTAGCTAATTCAAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGCACACCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACCGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGACGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACCGAGGCTTGGCTACAGATAATTGAATGTAGACGTGTTCTAAAATGGACTTATGCATATGGTTATTACCTGCCGGAACTGGAGCATGCCAAGAGGCAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACACGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGTACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCGACCAGAAGTGGCGACAATGCCACTCACTGGTCGTGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA 1941 44.15 FISFSSLSLSFSQKPKPKPKPHFDSLSSLIFLLSFSLLYRPPQEFPFPLFSQFIAMDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDDTDDYFEASRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNNRIKSAACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11422011 11429368 - MELO3C011640.2.1 Cme03g00666 322677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00666 646 SUPERFAMILY RING/U-box 265 333 - -
Cme03g00666 646 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 594 IPR031127 GO:0004842|GO:0016567
Cme03g00666 646 Pfam Ariadne domain 413 574 IPR045840 -
Cme03g00666 646 SUPERFAMILY RING/U-box 192 273 - -
Cme03g00666 646 SMART ibrneu5 264 326 IPR002867 -
Cme03g00666 646 SMART ibrneu5 330 400 IPR002867 -
Cme03g00666 646 Gene3D - 322 577 - -
Cme03g00666 646 MobiDBLite consensus disorder prediction 578 598 - -
Cme03g00666 646 MobiDBLite consensus disorder prediction 578 620 - -
Cme03g00666 646 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 81 594 - -
Cme03g00666 646 Pfam IBR domain, a half RING-finger domain 264 326 IPR002867 -
Cme03g00666 646 Pfam IBR domain, a half RING-finger domain 343 391 IPR002867 -
Cme03g00666 646 Gene3D - 616 646 - -
Cme03g00666 646 SUPERFAMILY RING/U-box 345 393 - -
Cme03g00666 646 ProSiteProfiles Zinc finger RING-type profile. 195 241 IPR001841 -
Cme03g00666 646 SMART zf_4 621 645 IPR001876 -
Cme03g00666 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 279 IPR013083 -
Cme03g00666 646 ProSiteProfiles Zinc finger RanBP2 type profile. 615 646 IPR001876 -
Cme03g00666 646 SUPERFAMILY Ran binding protein zinc finger-like 619 644 IPR036443 -
Cme03g00666 646 ProSiteProfiles TRIAD supradomain profile. 191 404 IPR044066 -
Cme03g00666 646 MobiDBLite consensus disorder prediction 606 620 - -
Cme03g00666 646 Coils Coil 412 432 - -
Cme03g00666 646 ProSitePatterns Zinc finger RanBP2-type signature. 623 642 IPR001876 -
Cme03g00666 646 CDD RING-HC_RBR_TRIAD1_like 195 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00666 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1156.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00666 Cme-Chr3:11422011 Cme05g01015 Cme-Chr5:14651663 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00468 . 164 543 ARIADNE family AT4G34370 77.1 2.8e-178 621.7
Cme11g00468 . 58 544 ARIADNE family AT2G16090 77.3 3.2e-226 781.2
Cme11g00468 . 28 543 ARIADNE family AT3G27710 61.7 3.0e-185 645.2
Cme11g00468 . 44 522 ARIADNE family AT3G27720 54.5 5.2e-144 508.1
Cme05g01015 . 2 477 ARIADNE family AT1G05890 72.5 6.6e-218 753.8
Cme03g00666 . 116 584 ARIADNE family AT1G05890 73.1 4.0e-215 744.6
Cme05g01015 . 1 532 ARIADNE family AT1G65430 75.0 1.4e-249 859.0
Cme03g00666 . 71 643 ARIADNE family AT1G65430 67.7 5.8e-240 827.0
Cme05g01015 . 1 395 ARIADNE family AT2G31780 56.7 9.5e-145 510.4
Cme03g00666 . 112 509 ARIADNE family AT2G31780 57.5 4.4e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00666 Cme_Chr03 FPKM 1.484848 3.331398 1.864736 1.367932 3.002259 2.702607 3.646503 2.677179 2.833911 2.302782