Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00666 TTTATTTCTTTTTCTTCTCTCTCTCTCTCTTTCTCTCAGAAACCAAAACCAAAACCAAAACCCCACTTTGATTCTCTCTCATCCCTCATCTTTCTCCTCTCTTTCTCTCTCCTTTACCGACCCCCTCAAGAATTTCCATTCCCTCTCTTCTCCCAATTTATCGCCATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAGATGGACATGGGTATGGGTTATTACTCCGATGACGATGACCCTGATGCTGAGGATTTCGTCGATGATGATACCGATGATTACTTCGAGGCCAGCAGACGCGAGCAAAATTACACAATACTAAATGAGTCGGACATAAGACAACGGCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAATGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGGATTTGTTTCGAATCCTATCCAAATAATAGGATCAAGTCAGCTGCCTGTGGTCACCCTTTCTGCGTCTTCTGCTGGGAAGGCTACGTTAGCACATCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTCGATCAAGACATGATTAATTCATTGGCCTCCAGTGAAGACAGGAAAAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACCAAATGGTGCCCAGCGCCTGGTTGTGAGCATGCTGTTCTCTTTGACGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATAGCTTCTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAGAATATGAACTGGATATTAGCTAATTCAAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGCATGCACATGACTTGCACACCTCCGTGCAAATTTGAATTTTGCTGGCTATGTCATGGTGCATGGTCTGATCATGGTGAAAGAACCGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGACGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACCGAGGCTTGGCTACAGATAATTGAATGTAGACGTGTTCTAAAATGGACTTATGCATATGGTTATTACCTGCCGGAACTGGAGCATGCCAAGAGGCAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTCCATCAGTGTGCGGAAAAGGAGCTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACACGAAATTATTTTGAGAACCTTGTTAGAGCATTAGAAAATGGGCTTTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACAAGCTCAAAAAGTACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTGAGTCGAACTGCTAGCTCGACCAGAAGTGGCGACAATGCCACTCACTGGTCGTGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACTACATGTGAGATGTGCCATCAACGCCATTGA 1941 44.15 FISFSSLSLSFSQKPKPKPKPHFDSLSSLIFLLSFSLLYRPPQEFPFPLFSQFIAMDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDDTDDYFEASRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWNVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNNRIKSAACGHPFCVFCWEGYVSTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYSFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCHGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPELEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTASSTRSGDNATHWSCEHCTFVNTRSATTCEMCHQRH 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11422011 11429368 - MELO3C011640.2.1 Cme03g00666 322677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00666 646 SUPERFAMILY RING/U-box 265 333 - -
Cme03g00666 646 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 594 IPR031127 GO:0004842|GO:0016567
Cme03g00666 646 Pfam Ariadne domain 413 574 IPR045840 -
Cme03g00666 646 SUPERFAMILY RING/U-box 192 273 - -
Cme03g00666 646 SMART ibrneu5 264 326 IPR002867 -
Cme03g00666 646 SMART ibrneu5 330 400 IPR002867 -
Cme03g00666 646 Gene3D - 322 577 - -
Cme03g00666 646 MobiDBLite consensus disorder prediction 578 598 - -
Cme03g00666 646 MobiDBLite consensus disorder prediction 578 620 - -
Cme03g00666 646 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 81 594 - -
Cme03g00666 646 Pfam IBR domain, a half RING-finger domain 264 326 IPR002867 -
Cme03g00666 646 Pfam IBR domain, a half RING-finger domain 343 391 IPR002867 -
Cme03g00666 646 Gene3D - 616 646 - -
Cme03g00666 646 SUPERFAMILY RING/U-box 345 393 - -
Cme03g00666 646 ProSiteProfiles Zinc finger RING-type profile. 195 241 IPR001841 -
Cme03g00666 646 SMART zf_4 621 645 IPR001876 -
Cme03g00666 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 279 IPR013083 -
Cme03g00666 646 ProSiteProfiles Zinc finger RanBP2 type profile. 615 646 IPR001876 -
Cme03g00666 646 SUPERFAMILY Ran binding protein zinc finger-like 619 644 IPR036443 -
Cme03g00666 646 ProSiteProfiles TRIAD supradomain profile. 191 404 IPR044066 -
Cme03g00666 646 MobiDBLite consensus disorder prediction 606 620 - -
Cme03g00666 646 Coils Coil 412 432 - -
Cme03g00666 646 ProSitePatterns Zinc finger RanBP2-type signature. 623 642 IPR001876 -
Cme03g00666 646 CDD RING-HC_RBR_TRIAD1_like 195 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00666 Cme-Chr3:11422011 Cme05g01015 Cme-Chr5:14651663 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00666 K11968 - csv:101223037 1156.74