Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00675 ATGGGTTCATGCCTCTCTGGGGACCGCCACAAGCGTACGATCCCTTACTCTGAGATTGCTTCTACTTCTCGTGATGATGGCGTTATTACTCGAAGGAACTCCAAGAGGAAGATTACGAGAAAGGGTTCTTCTCCCTCCAATGATTCTTCAAGAGAGATGTCGCTTCATCGAATTCCTGGCCGGATGTTTTTGAATGGAACAACTGATCATGCTTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAATTTTGGCACAAAAGAAGACACAATATTTTGTGGAGTCTTTGATGGACATGGTCCCTTTGGCCATATGGTTGCAAAAAAAGTCAGAGATTCTCTTCCTCTAAAACTGAATGCTCAGTTGGAGTTGGATGCTACCAGAAAGGAAGGGCAAAATGATGCCAGATGTCAAGTCTCTCCACCAACGTTGGTTAACAAGGGCTCTGGAACCTCTCATTGTGATCCTGATCATCGGGGCAACATTTATGTCATGCTGAAAGAGTCTTTTCTGAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACGACATCAGTTGCTTTGGTGAAACAGGGTAGGGATCTTATCATTGGAAATGTTGGGGACTCGAGGGCTGTTTTAGGGACCAGAGATAAATCTAATTCTCTTGTTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCATCCTAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCACTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCTAACAATGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGCGTGATAGCAGTTCCTGATGTTTCTTATCGTCATCTTACTGAGAAAGATGAGTTTGTGGTACTTGCTACTGATGGGGTTTGGGATGTTCTCTCAAACGAAGAGGTTGTAGCAGTTGTTGCATCGTCACCGAGATCCTCTGCAGCTCGTGTCCTTGTGGATTCAGCTACTCGAGCATGGAGATTGAAGTATCCCACTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTACCTGGACTCTAACGAGAGTTCTGCAACAACAGCTAAGGAGCAGGAGTTCGCCAATGACATGGAAACTTAG 1200 45.0 MGSCLSGDRHKRTIPYSEIASTSRDDGVITRRNSKRKITRKGSSPSNDSSREMSLHRIPGRMFLNGTTDHASLFTRQGKKGINQDAMIVWENFGTKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLNAQLELDATRKEGQNDARCQVSPPTLVNKGSGTSHCDPDHRGNIYVMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLVAVQLTVDLKPNHPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSYRHLTEKDEFVVLATDGVWDVLSNEEVVAVVASSPRSSAARVLVDSATRAWRLKYPTAKVDDCAVVCLYLDSNESSATTAKEQEFANDMET 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11671461 11676287 + MELO3C011629.2.1 Cme03g00675 322686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00675 399 MobiDBLite consensus disorder prediction 15 54 - -
Cme03g00675 399 MobiDBLite consensus disorder prediction 142 159 - -
Cme03g00675 399 MobiDBLite consensus disorder prediction 141 161 - -
Cme03g00675 399 Gene3D - 65 380 IPR036457 -
Cme03g00675 399 ProSiteProfiles PPM-type phosphatase domain profile. 70 378 IPR001932 -
Cme03g00675 399 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 388 - -
Cme03g00675 399 CDD PP2Cc 70 378 IPR001932 -
Cme03g00675 399 SUPERFAMILY PP2C-like 69 379 IPR036457 -
Cme03g00675 399 Pfam Protein phosphatase 2C 84 355 IPR001932 -
Cme03g00675 399 PANTHER ALPHABET, ISOFORM E-RELATED 1 388 - -
Cme03g00675 399 SMART PP2C_4 59 376 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00675 Cme-Chr3:11671461 Cme05g00950 Cme-Chr5:13176826 6.51E-171 dispersed
Cme03g00675 Cme-Chr3:11671461 Cme05g01581 Cme-Chr5:25027632 4.68E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00675 - - csv:101222320 751.895