Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00717 ATGGTGAAGAAGGAATTAGGAAATGATGACAATCATTCGACGTCAGTCCCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGTTGGGGCTCATGGGTTTCTGAAATTAGAGCTCCAAACCAAAAGACAAGAATATGGTTAGGTTCATATTCTACAGCCGAGGCCGCCGCAAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCCGCCAATCTCAACTTTCCAATCTCTTCATCTTCCTTTGCTCATTTTCACAATTTTCTTGATGATAATAATGTCATGTCTCCTAAGTCCATCCAAAGATTTGCTGCCGAAGCTGCTGCCAACACTGCGTTTTTTGATGGCATTGTTGAAAGTAACATGGCGGGATCTAGCGATGTCCCACCGTTGTCGCCATTGCTTTCCTCCTCCTCTTCTTCTTCTTCGTCTTTCTCGTCAACTTCGAACAGTGATTCGTTTACGATGTCGGACCCGTCGTGGTTCAACTTTGATGACATACTTTCTCCTAAGTATGTTGGGCAAATGATGGATTGGACTCTATTTGATCCACCCGTTATGGATGATTTTTATGAGGAAAGTGACATACGTCTCTGGAGCTTCTGTTGA 618 43.85 MVKKELGNDDNHSTSVPTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLDDNNVMSPKSIQRFAAEAAANTAFFDGIVESNMAGSSDVPPLSPLLSSSSSSSSSFSSTSNSDSFTMSDPSWFNFDDILSPKYVGQMMDWTLFDPPVMDDFYEESDIRLWSFC 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13034319 13035022 + MELO3C027289.2.1 Cme03g00717 322728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00717 205 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Cme03g00717 205 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Cme03g00717 205 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Cme03g00717 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 205 - -
Cme03g00717 205 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cme03g00717 205 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Cme03g00717 205 MobiDBLite consensus disorder prediction 1 21 - -
Cme03g00717 205 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Cme03g00717 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 15 205 - -
Cme03g00717 205 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Cme03g00717 205 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00717 Cme-Chr3:13034319 Cme07g00862 Cme-Chr7:8608626 1.54E-39 dispersed
Cme03g00717 Cme-Chr3:13034319 Cme07g00327 Cme-Chr7:2085146 2.06E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41003 PF00847 AP2 3.80E-12 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00717 - - csv:101205811 343.969