Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00783 ATGCAGAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCAATCTTTCTTCGGGGAGATGATAGTGGAAGATTTCATACGCGTTTTCTTCCGGACATTGAGGAACTTCAACAATCCGCTGCTGCTATTGCTACTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCGGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAACACGGATGTGGGTTCCATAGGACGAAGGGGGTATTTAGATACAGGACAGGAATTGATGCGGTTGAAAAGGGTGGCTCCGCCGCATTCGCTGGCGGTGACGGTCGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAACAGACTGACACTTCCACAGATATCGACAATGATGAAAGACACCAGTTCCAAGGAGCTGTACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAAGCAAAATCGGCAGATCAAAAGTTCTTGAAACTTCAATATGTAACCATTGAAATCTTTTATCAGACTCTTCGTCGACTTGCTCAAAATCGAGAAGCAGCGAGGAAGAGTCGACTGAGGAAAAAAGCATATGTCCAGCAGCTGGAAAATAGTAGACAGAGGCTTGCGCAGCTAGAGCAGGAGCTTCATCGAGCACGTCAACAGGGCATTTTTGTGACTTCTGGGGTAGGAGACCATTGTGCATCGATGGCAGGAAATGGTGCCTTGGCATTTGATCTTGACTATGCACGTTGGCTTGATGAGCATCAACGGCTTATCAATGATTTGAGAGCTTCGGCAAATTCTCAGCTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGACTCATTATGATGAACTCTTTAGGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTATCGGGGATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGTTGGGAGGATTTCGTTCGTCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTTTAACAGATCAGCAATTGATGGGTATATGCAATTTGCAGCAATCTTCTCAACAAGCTGAAGATGCGTTGTCACAAGGCATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCTCTGCTTCTTTAGGGCCAGCCAGTTCAGGAAATGTCGCTGATTACATGGGCCAAATGGCGATTGCAATGAGCAAGCTAACTACGCTTGAGAACTTTCTACATCAGGCTGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCATTACTTGTGATCAGTGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTTTGGTTAGCACGACCGAAAGAGTGA 1443 46.02 MQSFENPEQFYAHSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIATFHQDDAVDLSPSSVFGLKSTHNTAFPIHLPYGNTDVGSIGRRGYLDTGQELMRLKRVAPPHSLAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDNDERHQFQGAVHGALMAVDSMDQSKAKSADQKFLKLQYVTIEIFYQTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVTSGVGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMTHYDELFRLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSSASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPKE 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14620221 14623678 - MELO3C011550.2.1 Cme03g00783 322794

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00783 480 Gene3D - 195 244 - -
Cme03g00783 480 MobiDBLite consensus disorder prediction 128 149 - -
Cme03g00783 480 SUPERFAMILY Leucine zipper domain 197 238 IPR046347 GO:0003700|GO:0006355
Cme03g00783 480 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 237 IPR004827 GO:0003700|GO:0006355
Cme03g00783 480 SMART brlzneu 191 258 IPR004827 GO:0003700|GO:0006355
Cme03g00783 480 ProSiteProfiles DOG1 domain profile. 261 477 IPR025422 GO:0006351|GO:0043565
Cme03g00783 480 Coils Coil 214 241 - -
Cme03g00783 480 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 52 480 - -
Cme03g00783 480 MobiDBLite consensus disorder prediction 128 145 - -
Cme03g00783 480 Pfam Seed dormancy control 279 352 IPR025422 GO:0006351|GO:0043565
Cme03g00783 480 PANTHER TRANSCRIPTION FACTOR TGA9 52 480 - -
Cme03g00783 480 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
Cme03g00783 480 Pfam bZIP transcription factor 197 234 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00783 K14431 TGA; transcription factor TGA - csv:101210308 865.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00783 Cme-Chr3:14620221 Cme10g00013 Cme-Chr10:143381 1.01E-159 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01717 . 89 318 bZIP Transcription Factor Family AT5G24800 50.2 2.4e-45 179.5
Cme06g02439 CCT 1 343 bZIP Transcription Factor Family AT2G35530 68.2 5.0e-108 388.3
Cme04g00153 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.1 1.1e-99 360.5
Cme10g01249 CCT,ECH 16 344 bZIP Transcription Factor Family AT2G40620 58.5 8.2e-86 314.3
Cme03g00331 CCT,ECH 170 321 bZIP Transcription Factor Family AT2G40620 65.1 4.3e-42 169.1
Cme01g01318 . 397 521 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Cme01g01319 . 394 518 bZIP Transcription Factor Family AT2G40620 69.6 8.4e-38 154.8
Cme11g00379 CCT 1 262 bZIP Transcription Factor Family AT4G35040 57.2 1.3e-64 243.4
Cme01g01263 CCT 1 232 bZIP Transcription Factor Family AT4G35040 62.6 1.2e-59 226.9
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT5G06950 76.7 3.1e-132 468.4
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT5G06950 67.6 3.4e-115 411.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT5G06950 58.0 1.3e-109 393.3
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06950 57.9 2.5e-86 315.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06950 56.3 3.8e-82 302.0
Cme07g01733 . 43 360 bZIP Transcription Factor Family AT5G06950 50.6 2.4e-76 282.7
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT5G06950 58.6 7.2e-73 271.2
Cme12g00629 . 166 490 bZIP Transcription Factor Family AT1G08320 72.3 1.3e-128 456.4
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT1G08320 67.9 2.0e-100 362.8
Cme03g01483 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.1e-98 355.1
Cme10g00013 . 44 331 bZIP Transcription Factor Family AT1G08320 61.1 3.0e-93 339.0
Cme03g00783 . 196 480 bZIP Transcription Factor Family AT1G08320 58.9 1.7e-88 323.2
Cme04g02220 . 201 470 bZIP Transcription Factor Family AT1G08320 56.3 9.2e-74 274.2
Cme11g00379 CCT 1 261 bZIP Transcription Factor Family AT2G16770 58.4 7.1e-65 244.2
Cme01g01263 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.2 3.7e-61 231.9
Cme03g01483 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 1.8e-129 459.1
Cme10g00013 . 32 331 bZIP Transcription Factor Family AT5G06960 77.3 9.6e-120 426.8
Cme03g00783 . 161 480 bZIP Transcription Factor Family AT5G06960 65.3 2.2e-103 372.5
Cme04g02110 . 170 555 bZIP Transcription Factor Family AT5G06960 56.5 8.8e-97 350.5
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06960 56.8 2.5e-83 305.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06960 55.6 3.3e-80 295.4
Cme07g01733 . 53 360 bZIP Transcription Factor Family AT5G06960 52.2 4.7e-74 275.0
Cme04g02220 . 205 470 bZIP Transcription Factor Family AT5G06960 57.4 1.8e-73 273.1
Cme01g01319 . 1 564 bZIP Transcription Factor Family AT4G38900 56.0 1.3e-132 470.3
Cme01g01318 . 1 519 bZIP Transcription Factor Family AT4G38900 59.9 8.7e-132 467.6
Cme03g00331 CCT,ECH 115 306 bZIP Transcription Factor Family AT4G38900 56.3 1.5e-38 157.9
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT4G38900 54.9 6.2e-37 152.5
Cme10g01249 CCT,ECH 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.1e-37 152.1
Cme06g00865 CCT 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cme01g01319 . 2 534 bZIP Transcription Factor Family AT2G21230 50.2 4.4e-101 365.5
Cme01g01318 . 65 547 bZIP Transcription Factor Family AT2G21230 53.2 1.4e-99 360.5
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 6.9e-38 155.6
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT2G42380 56.1 4.4e-60 228.4
Cme03g02053 . 6 353 bZIP Transcription Factor Family AT1G45249 54.3 1.0e-84 310.8
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT3G12250 76.4 3.4e-131 464.9
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT3G12250 66.2 4.2e-113 404.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT3G12250 58.4 1.6e-109 392.9
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT3G12250 57.9 3.7e-85 312.0
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT3G12250 57.3 1.7e-82 303.1
Cme07g01733 . 46 360 bZIP Transcription Factor Family AT3G12250 52.6 6.3e-77 284.6
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT3G12250 58.2 5.5e-73 271.6
Cme03g00783 . 15 480 bZIP Transcription Factor Family AT1G68640 60.7 5.5e-140 494.6
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 1.2e-115 413.7
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT1G68640 64.7 4.5e-110 395.2
Cme04g02110 . 135 555 bZIP Transcription Factor Family AT1G68640 52.4 1.0e-98 357.5
Cme12g00629 . 183 461 bZIP Transcription Factor Family AT1G68640 57.4 5.9e-86 315.1
Cme11g01914 . 187 481 bZIP Transcription Factor Family AT1G68640 52.6 8.3e-80 294.7
Cme04g02220 . 212 470 bZIP Transcription Factor Family AT1G68640 53.2 1.0e-69 261.2
Cme03g00331 CCT,ECH 31 346 bZIP Transcription Factor Family AT1G43700 53.3 3.6e-67 252.3
Cme01g00679 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Cme06g00865 CCT 42 370 bZIP Transcription Factor Family AT2G31370 71.2 1.4e-115 413.3
Cme06g00875 . 43 360 bZIP Transcription Factor Family AT2G31370 67.4 1.6e-103 373.2
Cme10g01249 CCT,ECH 25 248 bZIP Transcription Factor Family AT2G31370 52.5 5.1e-49 192.2
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT3G58120 50.9 1.5e-55 213.4
Cme03g01118 . 17 296 bZIP Transcription Factor Family AT3G56850 55.2 1.3e-60 230.3
Cme06g02439 CCT 1 345 bZIP Transcription Factor Family AT1G32150 62.9 5.3e-99 358.2
Cme04g00153 CCT 1 345 bZIP Transcription Factor Family AT1G32150 61.3 9.3e-96 347.4
Cme06g00865 CCT 10 366 bZIP Transcription Factor Family AT1G06070 69.7 1.4e-124 443.4
Cme06g00875 . 1 358 bZIP Transcription Factor Family AT1G06070 67.7 2.9e-119 425.6
Cme01g01319 . 383 545 bZIP Transcription Factor Family AT1G06070 58.1 1.5e-38 157.5
Cme01g01318 . 385 529 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Cme03g02053 . 6 353 bZIP Transcription Factor Family AT1G45249 54.3 1.0e-84 310.8
Cme06g02439 CCT 1 343 bZIP Transcription Factor Family AT2G35530 68.2 5.0e-108 388.3
Cme04g00153 CCT 1 344 bZIP Transcription Factor Family AT2G35530 61.1 1.1e-99 360.5
Cme10g01249 CCT,ECH 16 344 bZIP Transcription Factor Family AT2G40620 58.5 8.2e-86 314.3
Cme03g00331 CCT,ECH 170 321 bZIP Transcription Factor Family AT2G40620 65.1 4.3e-42 169.1
Cme01g01318 . 397 521 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Cme01g01319 . 394 518 bZIP Transcription Factor Family AT2G40620 69.6 8.4e-38 154.8
Cme11g00379 CCT 1 262 bZIP Transcription Factor Family AT4G35040 57.2 1.3e-64 243.4
Cme01g01263 CCT 1 232 bZIP Transcription Factor Family AT4G35040 62.6 1.2e-59 226.9
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT5G06950 76.7 3.1e-132 468.4
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT5G06950 67.6 3.4e-115 411.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT5G06950 58.0 1.3e-109 393.3
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06950 57.9 2.5e-86 315.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06950 56.3 3.8e-82 302.0
Cme07g01733 . 43 360 bZIP Transcription Factor Family AT5G06950 50.6 2.4e-76 282.7
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT5G06950 58.6 7.2e-73 271.2
Cme12g00629 . 166 490 bZIP Transcription Factor Family AT1G08320 72.3 1.3e-128 456.4
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT1G08320 67.9 2.0e-100 362.8
Cme03g01483 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.1e-98 355.1
Cme10g00013 . 44 331 bZIP Transcription Factor Family AT1G08320 61.1 3.0e-93 339.0
Cme03g00783 . 196 480 bZIP Transcription Factor Family AT1G08320 58.9 1.7e-88 323.2
Cme04g02220 . 201 470 bZIP Transcription Factor Family AT1G08320 56.3 9.2e-74 274.2
Cme11g00379 CCT 1 261 bZIP Transcription Factor Family AT2G16770 58.4 7.1e-65 244.2
Cme01g01263 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.2 3.7e-61 231.9
Cme03g01483 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 1.8e-129 459.1
Cme10g00013 . 32 331 bZIP Transcription Factor Family AT5G06960 77.3 9.6e-120 426.8
Cme03g00783 . 161 480 bZIP Transcription Factor Family AT5G06960 65.3 2.2e-103 372.5
Cme04g02110 . 170 555 bZIP Transcription Factor Family AT5G06960 56.5 8.8e-97 350.5
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT5G06960 56.8 2.5e-83 305.8
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT5G06960 55.6 3.3e-80 295.4
Cme07g01733 . 53 360 bZIP Transcription Factor Family AT5G06960 52.2 4.7e-74 275.0
Cme04g02220 . 205 470 bZIP Transcription Factor Family AT5G06960 57.4 1.8e-73 273.1
Cme01g01319 . 1 564 bZIP Transcription Factor Family AT4G38900 56.0 1.3e-132 470.3
Cme01g01318 . 1 519 bZIP Transcription Factor Family AT4G38900 59.9 8.7e-132 467.6
Cme03g00331 CCT,ECH 115 306 bZIP Transcription Factor Family AT4G38900 56.3 1.5e-38 157.9
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT4G38900 54.9 6.2e-37 152.5
Cme10g01249 CCT,ECH 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.1e-37 152.1
Cme06g00865 CCT 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cme01g01319 . 2 534 bZIP Transcription Factor Family AT2G21230 50.2 4.4e-101 365.5
Cme01g01318 . 65 547 bZIP Transcription Factor Family AT2G21230 53.2 1.4e-99 360.5
Cme01g00679 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 6.9e-38 155.6
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT2G42380 56.1 4.4e-60 228.4
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT3G12250 76.4 3.4e-131 464.9
Cme03g00783 . 135 480 bZIP Transcription Factor Family AT3G12250 66.2 4.2e-113 404.8
Cme04g02110 . 137 555 bZIP Transcription Factor Family AT3G12250 58.4 1.6e-109 392.9
Cme12g00629 . 178 461 bZIP Transcription Factor Family AT3G12250 57.9 3.7e-85 312.0
Cme11g01914 . 209 481 bZIP Transcription Factor Family AT3G12250 57.3 1.7e-82 303.1
Cme07g01733 . 46 360 bZIP Transcription Factor Family AT3G12250 52.6 6.3e-77 284.6
Cme04g02220 . 224 470 bZIP Transcription Factor Family AT3G12250 58.2 5.5e-73 271.6
Cme03g00783 . 15 480 bZIP Transcription Factor Family AT1G68640 60.7 5.5e-140 494.6
Cme03g01483 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 1.2e-115 413.7
Cme10g00013 . 1 331 bZIP Transcription Factor Family AT1G68640 64.7 4.5e-110 395.2
Cme04g02110 . 135 555 bZIP Transcription Factor Family AT1G68640 52.4 1.0e-98 357.5
Cme12g00629 . 183 461 bZIP Transcription Factor Family AT1G68640 57.4 5.9e-86 315.1
Cme11g01914 . 187 481 bZIP Transcription Factor Family AT1G68640 52.6 8.3e-80 294.7
Cme04g02220 . 212 470 bZIP Transcription Factor Family AT1G68640 53.2 1.0e-69 261.2
Cme03g00331 CCT,ECH 31 346 bZIP Transcription Factor Family AT1G43700 53.3 3.6e-67 252.3
Cme01g00679 . 12 293 bZIP Transcription Factor Family AT1G43700 52.1 2.8e-64 242.7
Cme06g00865 CCT 42 370 bZIP Transcription Factor Family AT2G31370 71.2 1.4e-115 413.3
Cme06g00875 . 43 360 bZIP Transcription Factor Family AT2G31370 67.4 1.6e-103 373.2
Cme10g01249 CCT,ECH 25 248 bZIP Transcription Factor Family AT2G31370 52.5 5.1e-49 192.2
Cme01g00456 . 1 246 bZIP Transcription Factor Family AT3G58120 50.9 1.5e-55 213.4
Cme03g01118 . 17 296 bZIP Transcription Factor Family AT3G56850 55.2 1.3e-60 230.3
Cme06g02439 CCT 1 345 bZIP Transcription Factor Family AT1G32150 62.9 5.3e-99 358.2
Cme04g00153 CCT 1 345 bZIP Transcription Factor Family AT1G32150 61.3 9.3e-96 347.4
Cme06g00865 CCT 10 366 bZIP Transcription Factor Family AT1G06070 69.7 1.4e-124 443.4
Cme06g00875 . 1 358 bZIP Transcription Factor Family AT1G06070 67.7 2.9e-119 425.6
Cme01g01319 . 383 545 bZIP Transcription Factor Family AT1G06070 58.1 1.5e-38 157.5
Cme01g01318 . 385 529 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Cme03g01717 . 89 318 bZIP Transcription Factor Family AT5G24800 50.2 2.4e-45 179.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005530 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41007 PF14144 DOG1 1.60E-29 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00783 Cme_Chr03 FPKM 1.712177 1.247362 1.743441 2.49461 11.877605 12.759033 11.343269 2.881855 2.230855 2.481699