Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00787 ATGGTTTACTCCGACAAAATGCAAGAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGACACTTTGGAACAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTTCCTCTCTGTTTGCAGCTTGTTTCCCATGCCATTGATTGTTGTAGGCAGCAGTTATCGGGGACGACTACGGAGAATCGTCAATCCGAGTGTTCTGAGCAGACTTCCAGTGATATTGGTCCGGTTCTTGAGGAATTTATTCCCATCAACAGAAATGGGGTTTCGGATTTTGAAAAAACGGAGAAGATTAACAAAAACGATGACCCTGATTTAAATAATTTGAATTTGGCTCCGTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCTTGAATCAGGACCTGCCGGAGAATACGCCGGTTGTTGAGGTCAATAGAAATGGGGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCTGCGGTGGCGGGGGAGGGGCCTCGTCGTCTTCACCTCCTGCTCCGGCTGCGGAAACCAGCTCGACGACGGAAACGGGTTCAGGCGGAAGTAGTCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAGAGACGTTGCTGGTCGCCGGAGCTTCACCGACGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGGTCACATGTGGCGACGCCGAAGCAAATAAGAGAATTGATGAAGGTTGATGGTCTTACCAACGATGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGACCTACTCCGACGATCCACAACAACGAGAGCGGCCACACGCCCCAGTTCCTAGTGGTTGGCGGCATATGGGTACCGGCAGCCGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTTGTCAGTGCCGCTACTACCAACGGAATTTATGCACCGGTGGTGGCAGCAGCAGCGCCGCAGCCATTAGCTAGCACAGTTCAAAAGCCAAAGCCGAAGCCCAAGATTATTCCTTCCTCCGCCGCGGTTGCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGA 1122 52.14 MVYSDKMQEIAAKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSGTTTENRQSECSEQTSSDIGPVLEEFIPINRNGVSDFEKTEKINKNDDPDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVNRNGGAFRPFQKEKTGGCGGGGGASSSSPPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHTPQFLVVGGIWVPAAEYAAVSTTTSSGEVVSAATTNGIYAPVVAAAAPQPLASTVQKPKPKPKIIPSSAAVAAVECNSPTTSSSTHTSSVSPASS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14749130 14752068 - MELO3C011546.2.1 Cme03g00787 322798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00787 373 MobiDBLite consensus disorder prediction 126 212 - -
Cme03g00787 373 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cme03g00787 373 MobiDBLite consensus disorder prediction 194 212 - -
Cme03g00787 373 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cme03g00787 373 MobiDBLite consensus disorder prediction 354 373 - -
Cme03g00787 373 PANTHER TRANSCRIPTION FACTOR HHO2 18 367 - -
Cme03g00787 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Cme03g00787 373 Gene3D - 207 265 - -
Cme03g00787 373 MobiDBLite consensus disorder prediction 177 193 - -
Cme03g00787 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 367 IPR044787 GO:0003700|GO:0006355
Cme03g00787 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01289 Cme-Chr2:18768798 Cme03g00787 Cme-Chr3:14749130 1.75E-61 dispersed
Cme03g00787 Cme-Chr3:14749130 Cme05g01953 Cme-Chr5:28074342 3.69E-57 dispersed
Cme10g00288 Cme-Chr10:1872211 Cme03g00787 Cme-Chr3:14749130 8.22E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41008 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00787 - - csv:101210056 580.867