Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00787 ATGGTTTACTCCGACAAAATGCAAGAAATTGCAGCCAAAATGGGTTTCACACTCTCCGATTTCGCCGACACTTTGGAACAAGAACGCCGCAAAGTCCTCATGTTTCAGCGCGAGCTTCCTCTCTGTTTGCAGCTTGTTTCCCATGCCATTGATTGTTGTAGGCAGCAGTTATCGGGGACGACTACGGAGAATCGTCAATCCGAGTGTTCTGAGCAGACTTCCAGTGATATTGGTCCGGTTCTTGAGGAATTTATTCCCATCAACAGAAATGGGGTTTCGGATTTTGAAAAAACGGAGAAGATTAACAAAAACGATGACCCTGATTTAAATAATTTGAATTTGGCTCCGTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCTTGAATCAGGACCTGCCGGAGAATACGCCGGTTGTTGAGGTCAATAGAAATGGGGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTGGCTGCGGTGGCGGGGGAGGGGCCTCGTCGTCTTCACCTCCTGCTCCGGCTGCGGAAACCAGCTCGACGACGGAAACGGGTTCAGGCGGAAGTAGTCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAGAGACGTTGCTGGTCGCCGGAGCTTCACCGACGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGGTCACATGTGGCGACGCCGAAGCAAATAAGAGAATTGATGAAGGTTGATGGTCTTACCAACGATGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGACCTACTCCGACGATCCACAACAACGAGAGCGGCCACACGCCCCAGTTCCTAGTGGTTGGCGGCATATGGGTACCGGCAGCCGAGTACGCCGCTGTGTCCACCACCACTTCATCTGGAGAAGTTGTCAGTGCCGCTACTACCAACGGAATTTATGCACCGGTGGTGGCAGCAGCAGCGCCGCAGCCATTAGCTAGCACAGTTCAAAAGCCAAAGCCGAAGCCCAAGATTATTCCTTCCTCCGCCGCGGTTGCCGCCGTGGAATGTAATTCTCCGACTACATCTTCGTCTACTCATACGTCGTCAGTTTCACCAGCTTCTTCTTGA 1122 52.14 MVYSDKMQEIAAKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSGTTTENRQSECSEQTSSDIGPVLEEFIPINRNGVSDFEKTEKINKNDDPDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDLPENTPVVEVNRNGGAFRPFQKEKTGGCGGGGGASSSSPPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHTPQFLVVGGIWVPAAEYAAVSTTTSSGEVVSAATTNGIYAPVVAAAAPQPLASTVQKPKPKPKIIPSSAAVAAVECNSPTTSSSTHTSSVSPASS 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14749130 14752068 - MELO3C011546.2.1 Cme03g00787 322798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00787 373 MobiDBLite consensus disorder prediction 126 212 - -
Cme03g00787 373 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cme03g00787 373 MobiDBLite consensus disorder prediction 194 212 - -
Cme03g00787 373 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cme03g00787 373 MobiDBLite consensus disorder prediction 354 373 - -
Cme03g00787 373 PANTHER TRANSCRIPTION FACTOR HHO2 18 367 - -
Cme03g00787 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Cme03g00787 373 Gene3D - 207 265 - -
Cme03g00787 373 MobiDBLite consensus disorder prediction 177 193 - -
Cme03g00787 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 367 IPR044787 GO:0003700|GO:0006355
Cme03g00787 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00787 - - - csv:101210056 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01289 Cme-Chr2:18768798 Cme03g00787 Cme-Chr3:14749130 1.75E-61 dispersed
Cme03g00787 Cme-Chr3:14749130 Cme05g01953 Cme-Chr5:28074342 3.69E-57 dispersed
Cme10g00288 Cme-Chr10:1872211 Cme03g00787 Cme-Chr3:14749130 8.22E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41008 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00787 Cme_Chr03 FPKM 201.222351 181.273544 131.989136 127.538208 217.784317 281.709167 229.719925 88.082077 107.025627 84.702019