Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00822 ATGGTTGCAGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCACTGGTTGGGGGTCAAGTGGGGGTGATCCATGTGGAGATTCTTGGGAAGGGATAAAATGTTCAGGATCATCCGTCACAGAAATAAGTTTATCAGATTTTGGACTAAGTGGATCAATGGGTTACCAGCTTTCAAATTTGGCATCTGTCACCTACTTTGATTTGAGCAAGAACAGCCTCAGTGGTGATATCCCCTACCAACTTCCCCCTAATGCAGTTCACATTGATCTTTCTGGGAACAGTTTCACTGGTAGTGTGCCATATTCAATATCTCAGATGACTGAACTTGAATTTCTAAATCTTGGTCATAACCAGCTTAGCAATCAACTGAGTGATATGTTTGGCAAGCTGGCTAAACTCAAAAGGCTGGATTTGTCCTTCAACAAAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACTGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAACGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAACAACAAATTCACTGGTTGGATTCCTGAGAGTCTCGAAGATATAGATAATTTGGAGTATGGAAATTCTTGGTCAACTGGACCCGCACCACCTCCACCACCAGGGACGGTATCTCCAACGAGCAAGAAGTCGAACAAGGAGGAGTCGAACAAGAATTCGGCAGTGAAAAGTGGGTTAGTGATAGCAGGAATAGCAATGGGAGTATTAGCAGTAATAGCAGTAGTGATTGGAATGACATCAAAAAGGAGGAGGCATGTATCTCATTATCTTGATGAAGACACAAGCCAACACAGATCATTCACTCCACTCACTTCCCAAGAACTCTCAAAGGGTAATGATAGTAATAATAATAATGGGATTGATAGAAAATCCTTCAATTCAGATGCTTCTATTGACATAAAAAGTGGTGTTAGTGTGGTTAGACCACCACCAGCTCCTTTAGATCCTGTTCGGTCCTTCAGTGATAATCAGTTTGCAACCCGTCTGAATTCGAGGACGAGAAGCACTTCGTTTCGTGCAACTTCTTATTCATTGGTTGATTTGCAAACCGCCACTGCTAATTTTGCTCCCGCTCGACTTCTTGGTGAGGGTACTATTGGACGTGTTTATAAGGCCAAGTTTGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGGAGGAGAACAGAGGAGTTCAGTGAAGTAGTAACAATAATTTCAAAACTTAATCACACAAACATAGCAGAAGTTGTTGGATATTGTTCAGAGCAGGGACATCATTTGTTGATTTATGAATTTTTCCCCAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTCAGTAAACCACTCACTTGGAACACCAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTCGAGTATCTTCACGAAGTTTGCTCGCCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCCGAACTTAATCCTCGTCTCTCGGACTACGGTTTGGCAACATTTTATAAGAGTAGAAGCCAAAACCCTGGAGGTGGATATGAGGCTCCAGAATGCAGTACAAAGGGTTCAAGTTATACTCTGAAGAGTGACATTCACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGCCGGATGCCTTATGACTCGAGTAAGGCAAAAGTGGAACAATGTCTAGTGAGATGGGCAACACCACAACTGCATGACATAGATGCGTTGGACAAAATGGTGGATCCTGCATTGAGAGGCTTATATCCACCAAAGTCGGTGTCTAGATTTGCAGATATAATTGCCCTTTGCGTTCAATCAGAGCCCGAATTTAGGCCTCCAATGTCCGAAGTGGTTCAAGCCTTGGTCACTTTGGTTCAACGTTCCAGTATGAATATGAGAGATGATCTTGGAAACTCCCGACGAATGGATGATTATGACTATTAA 2025 41.48 MVAVSALNVMFSSLNSPSQLTGWGSSGGDPCGDSWEGIKCSGSSVTEISLSDFGLSGSMGYQLSNLASVTYFDLSKNSLSGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMTELEFLNLGHNQLSNQLSDMFGKLAKLKRLDLSFNKISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLEYGNSWSTGPAPPPPPGTVSPTSKKSNKEESNKNSAVKSGLVIAGIAMGVLAVIAVVIGMTSKRRRHVSHYLDEDTSQHRSFTPLTSQELSKGNDSNNNNGIDRKSFNSDASIDIKSGVSVVRPPPAPLDPVRSFSDNQFATRLNSRTRSTSFRATSYSLVDLQTATANFAPARLLGEGTIGRVYKAKFGDGKVLAVKKIDSSVFQGRRTEEFSEVVTIISKLNHTNIAEVVGYCSEQGHHLLIYEFFPNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKSRSQNPGGGYEAPECSTKGSSYTLKSDIHSLGVVMLELLTGRMPYDSSKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15445884 15450528 + MELO3C011517.2.1 Cme03g00822 322833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00822 674 Gene3D Phosphorylase Kinase; domain 1 343 456 - -
Cme03g00822 674 Pfam Protein kinase domain 382 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00822 674 MobiDBLite consensus disorder prediction 210 243 - -
Cme03g00822 674 SUPERFAMILY Protein kinase-like (PK-like) 360 648 IPR011009 -
Cme03g00822 674 MobiDBLite consensus disorder prediction 287 317 - -
Cme03g00822 674 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 3 670 - -
Cme03g00822 674 PANTHER OS01G0253100 PROTEIN 3 670 IPR045271 GO:0004714|GO:0006468
Cme03g00822 674 Gene3D Ribonuclease Inhibitor 3 221 IPR032675 -
Cme03g00822 674 MobiDBLite consensus disorder prediction 278 317 - -
Cme03g00822 674 ProSiteProfiles Protein kinase domain profile. 379 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00822 674 Pfam Leucine rich repeat 131 173 IPR001611 GO:0005515
Cme03g00822 674 Pfam Leucine rich repeat N-terminal domain 5 41 IPR013210 -
Cme03g00822 674 SMART LRR_typ_2 136 159 IPR003591 -
Cme03g00822 674 SMART LRR_typ_2 112 135 IPR003591 -
Cme03g00822 674 Gene3D Transferase(Phosphotransferase) domain 1 457 671 - -
Cme03g00822 674 SUPERFAMILY L domain-like 16 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00822 - - - csv:101209107 1202.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00355 Cme-Chr1:2619716 Cme03g00822 Cme-Chr3:15445884 2.11E-156 dispersed
Cme03g00822 Cme-Chr3:15445884 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme03g00822 Cme-Chr3:15445884 Cme08g00325 Cme-Chr8:2068138 1.22E-136 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme12g00906 . 458 751 Strubbelig Receptor Gene Family AT1G11130 53.7 5.9e-85 312.4
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme04g01519 . 1 719 Strubbelig Receptor Gene Family AT1G53730 58.3 3.7e-207 718.4
Cme01g02755 . 1 691 Strubbelig Receptor Gene Family AT1G53730 59.0 5.1e-172 601.7
Cme03g00822 . 5 660 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-150 530.8
Cme12g00906 . 79 759 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-149 525.4
Cme04g01519 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.8 2.4e-187 652.5
Cme01g02755 . 6 681 Strubbelig Receptor Gene Family AT3G14350 53.5 1.0e-153 540.8
Cme12g00906 . 208 781 Strubbelig Receptor Gene Family AT4G22130 63.0 3.3e-179 625.2
Cme04g01519 . 398 719 Strubbelig Receptor Gene Family AT4G22130 63.3 1.9e-118 423.3
Cme01g02755 . 368 683 Strubbelig Receptor Gene Family AT4G22130 65.1 8.1e-117 417.9
Cme01g00355 . 454 778 Strubbelig Receptor Gene Family AT4G22130 56.8 2.9e-106 382.9
Cme03g00822 . 355 674 Strubbelig Receptor Gene Family AT4G22130 57.1 1.5e-99 360.5
Cme08g00325 . 367 655 Strubbelig Receptor Gene Family AT4G22130 60.5 1.3e-98 357.5
Cme04g02226 . 299 621 Strubbelig Receptor Gene Family AT4G22130 50.5 4.2e-89 325.9
Cme04g02225 . 334 624 Strubbelig Receptor Gene Family AT4G22130 51.2 1.7e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64738 PF00069 Pkinase 2.40E-40 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00822 Cme_Chr03 FPKM 18.329588 19.72448 102.552856 100.19516 13.302086 10.549067 11.336185 136.812256 136.654846 125.025291