Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00822 ATGGTTGCAGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCACTGGTTGGGGGTCAAGTGGGGGTGATCCATGTGGAGATTCTTGGGAAGGGATAAAATGTTCAGGATCATCCGTCACAGAAATAAGTTTATCAGATTTTGGACTAAGTGGATCAATGGGTTACCAGCTTTCAAATTTGGCATCTGTCACCTACTTTGATTTGAGCAAGAACAGCCTCAGTGGTGATATCCCCTACCAACTTCCCCCTAATGCAGTTCACATTGATCTTTCTGGGAACAGTTTCACTGGTAGTGTGCCATATTCAATATCTCAGATGACTGAACTTGAATTTCTAAATCTTGGTCATAACCAGCTTAGCAATCAACTGAGTGATATGTTTGGCAAGCTGGCTAAACTCAAAAGGCTGGATTTGTCCTTCAACAAAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACTGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAACGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAACAACAAATTCACTGGTTGGATTCCTGAGAGTCTCGAAGATATAGATAATTTGGAGTATGGAAATTCTTGGTCAACTGGACCCGCACCACCTCCACCACCAGGGACGGTATCTCCAACGAGCAAGAAGTCGAACAAGGAGGAGTCGAACAAGAATTCGGCAGTGAAAAGTGGGTTAGTGATAGCAGGAATAGCAATGGGAGTATTAGCAGTAATAGCAGTAGTGATTGGAATGACATCAAAAAGGAGGAGGCATGTATCTCATTATCTTGATGAAGACACAAGCCAACACAGATCATTCACTCCACTCACTTCCCAAGAACTCTCAAAGGGTAATGATAGTAATAATAATAATGGGATTGATAGAAAATCCTTCAATTCAGATGCTTCTATTGACATAAAAAGTGGTGTTAGTGTGGTTAGACCACCACCAGCTCCTTTAGATCCTGTTCGGTCCTTCAGTGATAATCAGTTTGCAACCCGTCTGAATTCGAGGACGAGAAGCACTTCGTTTCGTGCAACTTCTTATTCATTGGTTGATTTGCAAACCGCCACTGCTAATTTTGCTCCCGCTCGACTTCTTGGTGAGGGTACTATTGGACGTGTTTATAAGGCCAAGTTTGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGGAGGAGAACAGAGGAGTTCAGTGAAGTAGTAACAATAATTTCAAAACTTAATCACACAAACATAGCAGAAGTTGTTGGATATTGTTCAGAGCAGGGACATCATTTGTTGATTTATGAATTTTTCCCCAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTCAGTAAACCACTCACTTGGAACACCAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTCGAGTATCTTCACGAAGTTTGCTCGCCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCCGAACTTAATCCTCGTCTCTCGGACTACGGTTTGGCAACATTTTATAAGAGTAGAAGCCAAAACCCTGGAGGTGGATATGAGGCTCCAGAATGCAGTACAAAGGGTTCAAGTTATACTCTGAAGAGTGACATTCACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACGGGCCGGATGCCTTATGACTCGAGTAAGGCAAAAGTGGAACAATGTCTAGTGAGATGGGCAACACCACAACTGCATGACATAGATGCGTTGGACAAAATGGTGGATCCTGCATTGAGAGGCTTATATCCACCAAAGTCGGTGTCTAGATTTGCAGATATAATTGCCCTTTGCGTTCAATCAGAGCCCGAATTTAGGCCTCCAATGTCCGAAGTGGTTCAAGCCTTGGTCACTTTGGTTCAACGTTCCAGTATGAATATGAGAGATGATCTTGGAAACTCCCGACGAATGGATGATTATGACTATTAA 2025 41.48 MVAVSALNVMFSSLNSPSQLTGWGSSGGDPCGDSWEGIKCSGSSVTEISLSDFGLSGSMGYQLSNLASVTYFDLSKNSLSGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMTELEFLNLGHNQLSNQLSDMFGKLAKLKRLDLSFNKISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLEYGNSWSTGPAPPPPPGTVSPTSKKSNKEESNKNSAVKSGLVIAGIAMGVLAVIAVVIGMTSKRRRHVSHYLDEDTSQHRSFTPLTSQELSKGNDSNNNNGIDRKSFNSDASIDIKSGVSVVRPPPAPLDPVRSFSDNQFATRLNSRTRSTSFRATSYSLVDLQTATANFAPARLLGEGTIGRVYKAKFGDGKVLAVKKIDSSVFQGRRTEEFSEVVTIISKLNHTNIAEVVGYCSEQGHHLLIYEFFPNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKSRSQNPGGGYEAPECSTKGSSYTLKSDIHSLGVVMLELLTGRMPYDSSKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15445884 15450528 + MELO3C011517.2.1 Cme03g00822 322833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00822 674 Gene3D Phosphorylase Kinase; domain 1 343 456 - -
Cme03g00822 674 Pfam Protein kinase domain 382 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00822 674 MobiDBLite consensus disorder prediction 210 243 - -
Cme03g00822 674 SUPERFAMILY Protein kinase-like (PK-like) 360 648 IPR011009 -
Cme03g00822 674 MobiDBLite consensus disorder prediction 287 317 - -
Cme03g00822 674 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 3 670 - -
Cme03g00822 674 PANTHER OS01G0253100 PROTEIN 3 670 IPR045271 GO:0004714|GO:0006468
Cme03g00822 674 Gene3D Ribonuclease Inhibitor 3 221 IPR032675 -
Cme03g00822 674 MobiDBLite consensus disorder prediction 278 317 - -
Cme03g00822 674 ProSiteProfiles Protein kinase domain profile. 379 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00822 674 Pfam Leucine rich repeat 131 173 IPR001611 GO:0005515
Cme03g00822 674 Pfam Leucine rich repeat N-terminal domain 5 41 IPR013210 -
Cme03g00822 674 SMART LRR_typ_2 136 159 IPR003591 -
Cme03g00822 674 SMART LRR_typ_2 112 135 IPR003591 -
Cme03g00822 674 Gene3D Transferase(Phosphotransferase) domain 1 457 671 - -
Cme03g00822 674 SUPERFAMILY L domain-like 16 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00355 Cme-Chr1:2619716 Cme03g00822 Cme-Chr3:15445884 2.11E-156 dispersed
Cme03g00822 Cme-Chr3:15445884 Cme04g01519 Cme-Chr4:21789300 0 dispersed
Cme03g00822 Cme-Chr3:15445884 Cme08g00325 Cme-Chr8:2068138 1.22E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64738 PF00069 Pkinase 2.40E-40 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00822 - - csv:101209107 1202.58