Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme03g00892 | ATGTCATTGACTAATATTTCATCCCTTCAAGTGCTGGATCTATCGAATAACCATCTCTCAGGCATGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTCCCACCACCGCCTATATCTTCACCAGGAGGGAATAGTGCGACTGGAGCTATTGCTGGTGGAGTTGCTGCGGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCGTTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTCTTCTTCGATGTTCCTGCCGAAGAGGATCCAGAGGTGCATTTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGGAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCTGTTAAAAGACTTAAGGAAGAGCGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCCGTGCATCGGAACCTACTACGACTACGTGGATTTTGCATGACACCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCTCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCAAGAGGGCTGTCTTATTTGCACGATCACTGTGATCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAGCTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCCGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTGTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTATTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGATCTTCAAAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCTTTACTCTGCACACAAGGCTCCCCAATGGACCGACCAAAGATGTCCGAGGTGGTAAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTAGAAATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTCGATTCAACTGAAAATCTGCATGCAGTCGAGCTTTCTGGTCCAAGATGA | 1404 | 45.44 | MSLTNISSLQVLDLSNNHLSGMVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 16958995 | 16967399 | + | MELO3C026152.2.1 | Cme03g00892 | 322903 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme03g00892 | 467 | SMART | serkin_6 | 144 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g00892 | 467 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 267 | 279 | IPR008271 | GO:0004672|GO:0006468 | |
Cme03g00892 | 467 | ProSiteProfiles | Protein kinase domain profile. | 144 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g00892 | 467 | Gene3D | Transferase(Phosphotransferase) domain 1 | 221 | 438 | - | - | |
Cme03g00892 | 467 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 1 | 467 | - | - | |
Cme03g00892 | 467 | Gene3D | Ribonuclease Inhibitor | 1 | 56 | IPR032675 | - | |
Cme03g00892 | 467 | PANTHER | LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED | 1 | 467 | IPR031048 | GO:0004675|GO:0005102|GO:0006468 | |
Cme03g00892 | 467 | Gene3D | Phosphorylase Kinase; domain 1 | 113 | 220 | - | - | |
Cme03g00892 | 467 | Pfam | Protein kinase domain | 145 | 416 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme03g00892 | 467 | SUPERFAMILY | Protein kinase-like (PK-like) | 123 | 419 | IPR011009 | - | |
Cme03g00892 | 467 | ProSitePatterns | Protein kinases ATP-binding region signature. | 150 | 172 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g00892 | Cme-Chr3:16958995 | Cme07g01730 | Cme-Chr7:22801598 | 0 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64739 | PF00069 | Pkinase | 4.60E-45 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme03g00892 | K13418 | - | csv:101208695 | 841.262 |