Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00892 ATGTCATTGACTAATATTTCATCCCTTCAAGTGCTGGATCTATCGAATAACCATCTCTCAGGCATGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCCATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCTGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTCCCACCACCGCCTATATCTTCACCAGGAGGGAATAGTGCGACTGGAGCTATTGCTGGTGGAGTTGCTGCGGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCGTTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTCTTCTTCGATGTTCCTGCCGAAGAGGATCCAGAGGTGCATTTGGGACAGCTTAAAAGATTTTCACTGAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGGAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGATGGTTCTTTAGTAGCTGTTAAAAGACTTAAGGAAGAGCGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCCGTGCATCGGAACCTACTACGACTACGTGGATTTTGCATGACACCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCGTCTTGCTTAAGAGAACGACCACCATCTCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCAAGAGGGCTGTCTTATTTGCACGATCACTGTGATCCAAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAGCTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCCGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGTATCATGCTGTTAGAGCTTATCACTGGTCAAAGGGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTATTGAAAGAGAAGAAGCTAGAAATGCTGGTTGACCCTGATCTTCAAAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCTTTACTCTGCACACAAGGCTCCCCAATGGACCGACCAAAGATGTCCGAGGTGGTAAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTAGAAATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTCGATTCAACTGAAAATCTGCATGCAGTCGAGCTTTCTGGTCCAAGATGA 1404 45.44 MSLTNISSLQVLDLSNNHLSGMVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 16958995 16967399 + MELO3C026152.2.1 Cme03g00892 322903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00892 467 SMART serkin_6 144 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00892 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Cme03g00892 467 ProSiteProfiles Protein kinase domain profile. 144 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00892 467 Gene3D Transferase(Phosphotransferase) domain 1 221 438 - -
Cme03g00892 467 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 467 - -
Cme03g00892 467 Gene3D Ribonuclease Inhibitor 1 56 IPR032675 -
Cme03g00892 467 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 1 467 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cme03g00892 467 Gene3D Phosphorylase Kinase; domain 1 113 220 - -
Cme03g00892 467 Pfam Protein kinase domain 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00892 467 SUPERFAMILY Protein kinase-like (PK-like) 123 419 IPR011009 -
Cme03g00892 467 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00892 Cme-Chr3:16958995 Cme07g01730 Cme-Chr7:22801598 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64739 PF00069 Pkinase 4.60E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00892 K13418 - csv:101208695 841.262