Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00895 ATGGGCTGTGCACAGACGAAGCATTCCGTGAATTCGCCCTCTGGGGGAGTTGAGAAGCTGAAATTGGACAATGGGTATGCTGGGATTGATGGTTTTATTGCTCATCGGAGGTCGGTGGGGCAGAAGAGATTTGTTGGCAAGGAATCGTCTGAAGCAGAGAGGCCTCACGGCAGTGGGAATGACCAATTTGGTTCAGACAACAGTGAGCTAGTGGATGGGTGGCCCAAATGGCTTACTAGTAATATTCCTAAACATGTGTTGGCTGGCTTGGTACCCAAGAGCGTGGAGGCCTATGACAAACTGGATAAGGTAGGCCAAGGAAGTTATAGCAATGTGTACAAAGCTCGAGATAGGGAAACTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACAACAGAACCTGAGAGTGTGAAGTTCATGGCAAGAGAAATTATGATACTGCTGAAACTTGATCATCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTTGATTTTATGCAGACTGATCTGGCCCGAGTTATTTCCCACCCGGATGTACGGCTTACGGAGCCTCAGGTCAAATGCTATATGCATCAGCTACTCTCTGGTTTGAAGCATTGCCATGATAAAGGGATACTACATCGTGATATCAAAGGATCAAACCTGTTAATAGACAAAAATGGGATGCTGAAGATTGCCGATTTTGGGCTTGCTATTTTTTTCAGTCCAAAGAGGCATCTTACAAATCGTGTTGTGACTCTATGGTATCGAGCTCCGGAGCTATTGTTAGGTGCTACAGAATATGGAGTTGGCATTGATCTATGGAGTGCTGGATGTCTCTTTGCAGAAATGTTCACAGGAAGGCCAATTCTGCCAGGTCGAACAGAGGTTGAACAACTTCACAAAATTTTCAAGTTATGTGGTACACCATCTGAGGAGTATTGGAGAAAACTCAAGCTGCCACCTACTTTCAGACCTCCACAGTCGTATCGACCTAGTCTCAGAGAATCTTTTAAGCATTTTCCCTCATCTTCTCTAGGCCTACTCAACACTTTACTCGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTCAGCCATTGACAATGAATTCTTTTACACAAGCCCACTGGCATGCAGCCTTTCGGATCTTCCTATAATCCACAGTGATCCCGATGTACTGGATAAAACAAATCAGCAGAAGTCTAGGAATGCTAAAGTTACAAGGCGTTCACATACGCACCGTGAACGCCGGAGGAAAGATTTAACTTCCGGAATACTGAAAGAAGAATCAAACCTTCCCAAACAGCTTTCACAACAAAGGGGAGATGATGACGAACAAAATGAAGAGCGAGGGAGCACTACAACGAGCACCTCCTCAAGCGTTAACAATGGAGTACGGAAGGGGAGTACTATGTCAAGCACTTCTTCAGGTGTTAACACAGGAGGTCGAAAGACAACGAGCACCTCATCAAGTGTGAACACGGGAGGGGAAACAGGGAGCTCTCACTTCTTGCTATCTCCAATTTCATACTCTAATAGGAAGTCATCAAGAATCCAAGGCCATCTTCAGGTGACTAATAACCTCAACTTGCCTCCGTTGCCGAAGACAAGAGAATACTCAGCCTACAACATCAAAGACCATGGTGTCACGGGTCTGGTTCGGAGGTCGGTCTCGACTAGAGATTTCAGGAATTTGGAGCGAAAAGAGCATTTGAAATTGTATGCCGTTGATGATTAG 1758 45.05 MGCAQTKHSVNSPSGGVEKLKLDNGYAGIDGFIAHRRSVGQKRFVGKESSEAERPHGSGNDQFGSDNSELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRETGKIVALKKVRFDTTEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMQTDLARVISHPDVRLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGMLKIADFGLAIFFSPKRHLTNRVVTLWYRAPELLLGATEYGVGIDLWSAGCLFAEMFTGRPILPGRTEVEQLHKIFKLCGTPSEEYWRKLKLPPTFRPPQSYRPSLRESFKHFPSSSLGLLNTLLALEPSYRGSASSAIDNEFFYTSPLACSLSDLPIIHSDPDVLDKTNQQKSRNAKVTRRSHTHRERRRKDLTSGILKEESNLPKQLSQQRGDDDEQNEERGSTTTSTSSSVNNGVRKGSTMSSTSSGVNTGGRKTTSTSSSVNTGGETGSSHFLLSPISYSNRKSSRIQGHLQVTNNLNLPPLPKTREYSAYNIKDHGVTGLVRRSVSTRDFRNLERKEHLKLYAVDD 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17052593 17056860 + MELO3C024972.2.1 Cme03g00895 322906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00895 585 MobiDBLite consensus disorder prediction 43 66 - -
Cme03g00895 585 Pfam Protein kinase domain 98 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00895 585 MobiDBLite consensus disorder prediction 458 512 - -
Cme03g00895 585 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Cme03g00895 585 PANTHER CYCLIN-DEPENDENT KINASE 54 485 - -
Cme03g00895 585 Gene3D Transferase(Phosphotransferase) domain 1 181 425 - -
Cme03g00895 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Cme03g00895 585 PANTHER CELL DIVISION PROTEIN KINASE 54 485 - -
Cme03g00895 585 MobiDBLite consensus disorder prediction 398 512 - -
Cme03g00895 585 SUPERFAMILY Protein kinase-like (PK-like) 93 382 IPR011009 -
Cme03g00895 585 Gene3D Phosphorylase Kinase; domain 1 88 180 - -
Cme03g00895 585 CDD STKc_CDK9_like 98 378 - -
Cme03g00895 585 MobiDBLite consensus disorder prediction 409 423 - -
Cme03g00895 585 ProSiteProfiles Protein kinase domain profile. 98 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g00895 585 SMART serkin_6 98 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00895 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 1104.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00895 Cme-Chr3:17052593 Cme08g00466 Cme-Chr8:2847993 1.13E-173 dispersed
Cme03g00895 Cme-Chr3:17052593 Cme02g00153 Cme-Chr2:1140221 9.46E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64740 PF00069 Pkinase 4.40E-68 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00895 Cme_Chr03 FPKM 0.606965 1.758041 0.896051 1.024515 0.803141 1.12564 0.868236 7.055724 6.614623 6.126556