Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00918 AGCATAGCAGCAATAGGCGCGAGGCAGTCGATCTATGCCTTTGCCTCTCAGTTTCTGATTCCCTTCTCTTCCATTTTCGCTCTCTCTCTCTCTCCTCTCTCCATTTCTATCTCTCAGTTTAGGATGACTGAACCATCAAAAGTTATTCACGTCCGAAATGTTGGCCATGAAATATCGGAGAACGATTTGCTTCAGCTATTCCAGCCCTTTGGTGTCATAACTAAGCTTGTCATGCTTCGTGCTAAAAATCAGGCACTTATGCAGATGCAAGATGTTCCCTCAGCAGTTAATGCTTTGCAGTTCTTTGCTAATCTTCAACCAAGCATTAGGGGGAGGAATGTTTATGTCCAGTTTTCATCACATCAAGAGCTAACTACAGCAGATCAGAATGCTCAAGGACGAGGAGATGAGCCAAATCGAATACTCTTAGTCACAATCCATCACATGCTATATCCCATTACTGTGGAAGTGCTGCATCAAGTATTTTTCCCACATGGATTTGTGGAGAAGATCGTGACGTTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATTCAGTATCAAACTCGGCAATGTGCTGTTTCTGCTAGGACTGCACTACAGGGACGTAATATATATGATGGTTGCTGTCAGCTAGACATTCAGTTCTCCAATCTTGACGAATTACAGGTGAACTACAACAATGAACGTTCAAGGGATTTCACCAATCCTAGCCTGCCTTCTGAACCAAAAGGCCGGTCTTCTCAACCTGGTTATGGTGATACGGGAGGAATGTATGCACTTCAAGCATCTGGAGCGAGACCAGTTGGATTCTCACAGATGGCCAATGCGGCCGCTGTTGCTGCTGCATTTGGAGGAGGTTTGCCGCCTGGTGTTAGTGGAACAAACGACAGGTGTACAGTTCTTGTGTCCAATCTGAATCCTGATAGAATAGATGAAGACAAGCTTTTTAACCTTTTCTCCATTTACGGGAACATTGTAAGAATTAAGCTTCTCCGGAATAAACCTGATCATGCACTTGTGCAGATGGGAGATGGGTTCCAGGCAGAATTGGCTGTACACTTTTTGAAGGGAGCGATGTTGTTTGGCAAGAGATTGGAGGTCAACTTCTCAAAGCATCCTAACATTACACAAGGAGCTGATACTCATGAATATGCTAACTCGAACCTTAATCGTTTTAACCGAAATGCTGCAAAGAACTACCGCTACTGCTGCTCCCCGACAAAGATGATCCACATATCATCTCTATCTCAGGAAGTGACTGAAGAAGAGATAGTGAGTCTCCTTGAGGAGCATGGGCCGATTGTCAACAGCAAGCTCTTTGAGATGAACGGTAAGAAGCAGGCACTCATCATGTTTGACACTGAGGAGCAGGCGACTGAAGCTCTTGTTTGCAAGCATGCTAGTTTGCTTAGTGGGTCGATCATTCGCATTTCGTTTTCCCAGTTGCAGACTTTATGA 1458 44.65 SIAAIGARQSIYAFASQFLIPFSSIFALSLSPLSISISQFRMTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALMQMQDVPSAVNALQFFANLQPSIRGRNVYVQFSSHQELTTADQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFFPHGFVEKIVTFQKSAGFQALIQYQTRQCAVSARTALQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEPKGRSSQPGYGDTGGMYALQASGARPVGFSQMANAAAVAAAFGGGLPPGVSGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHISSLSQEVTEEEIVSLLEEHGPIVNSKLFEMNGKKQALIMFDTEEQATEALVCKHASLLSGSIIRISFSQLQTL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17583193 17593013 + MELO3C024993.2.1 Cme03g00918 322929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00918 485 SMART rrm1_1 143 212 IPR000504 GO:0003723
Cme03g00918 485 SMART rrm1_1 299 368 IPR000504 GO:0003723
Cme03g00918 485 SMART rrm1_1 409 478 IPR000504 GO:0003723
Cme03g00918 485 SMART rrm1_1 48 117 IPR000504 GO:0003723
Cme03g00918 485 CDD RRM1_PTBPH3 47 121 IPR034795 -
Cme03g00918 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 408 482 IPR000504 GO:0003723
Cme03g00918 485 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 42 484 - -
Cme03g00918 485 SUPERFAMILY RNA-binding domain, RBD 288 380 IPR035979 GO:0003676
Cme03g00918 485 MobiDBLite consensus disorder prediction 229 252 - -
Cme03g00918 485 Gene3D - 141 242 IPR012677 -
Cme03g00918 485 SUPERFAMILY RNA-binding domain, RBD 400 483 IPR035979 GO:0003676
Cme03g00918 485 Gene3D - 38 140 IPR012677 -
Cme03g00918 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 121 IPR000504 GO:0003723
Cme03g00918 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 385 - -
Cme03g00918 485 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 42 484 - -
Cme03g00918 485 CDD RRM4_PTBPH3 401 479 - -
Cme03g00918 485 MobiDBLite consensus disorder prediction 229 244 - -
Cme03g00918 485 CDD RRM3_PTBPH3 297 372 IPR034797 -
Cme03g00918 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 100 IPR000504 GO:0003723
Cme03g00918 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 412 472 IPR000504 GO:0003723
Cme03g00918 485 Gene3D - 295 388 IPR012677 -
Cme03g00918 485 SUPERFAMILY RNA-binding domain, RBD 138 239 IPR035979 GO:0003676
Cme03g00918 485 Pfam RRM-like domain 137 216 IPR021790 -
Cme03g00918 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 372 IPR000504 GO:0003723
Cme03g00918 485 Gene3D - 389 484 IPR012677 -
Cme03g00918 485 SUPERFAMILY RNA-binding domain, RBD 42 132 IPR035979 GO:0003676
Cme03g00918 485 TIGRFAM hnRNP-L_PTB: hnRNP-L/PTB/hephaestus splicing factor family 45 481 IPR006536 GO:0003723|GO:0005634|GO:0006397
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00918 K14948 PTBP2, NPTB; polypyrimidine tract-binding protein 2 - csv:101210828 870.152
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00918 Cme-Chr3:17583193 Cme09g01967 Cme-Chr9:23581121 1.39E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004715 2 1 2 2 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g00918 Cme_Chr03 FPKM 15.859794 15.90545 2.040968 2.85781 8.928166 11.660754 9.174169 0.098156 0.082701 0.043821