Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g00932 ATGGCCGCTCTTCACCAAACCGCCGCCTCTCTTCAGGCCAAGCTCCTTCCAACCGCTCGAATCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCTGCCACTTTTCCTTCTCGCGGACTCCGCCTCGGCCAACACCGCTCTCACGGCGGCGCAAGAATGTCGGCCACAGCCGCCGGAAGCTACGCTGCAGCACTAGCCGAAGTGGCAGCGTCGAACAACACACTTGACGCCACAAGCAGTGACGTGGAGAAGATTGAGAGCGTGTTCGCGGATCCACAGGTGTTGGATTTCTTCTCGAATCCAACGATTAGCGTGGAGAAGAAACAAGCAGTGGTGGACGAAATCGCTTCTTCGTCCTCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCTTGGTGGATGCGAAGAGAATCGACATCCTGAAGGAGATAGTTACGGAGTTTGAATTGGTGTATAACAAGATAACGAACACGGAACTTGCGGTGGTGAGTTCGGTTGTACAATTGGAGCAGCAACATTTGGCACAAATCGCGAAACAGGTGCAGAAATTGAGTGGAGCAAAGAATGTGAGGATAAAGACGCAGATTGATCCAAGTTTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCCAAACTCATTGATTTGAGTGTTAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 723 50.48 MAALHQTAASLQAKLLPTARISRTTPVNLSFSATFPSRGLRLGQHRSHGGARMSATAAGSYAAALAEVAASNNTLDATSSDVEKIESVFADPQVLDFFSNPTISVEKKQAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17806564 17807630 + MELO3C025005.2.1 Cme03g00932 322943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g00932 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 Gene3D - 57 149 IPR026015 -
Cme03g00932 240 PANTHER ATP SYNTHASE DELTA CHAIN 47 239 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 PANTHER BNACNNG66500D PROTEIN 47 239 - -
Cme03g00932 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
Cme03g00932 240 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 58 231 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986|GO:0046933
Cme03g00932 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986|GO:0016020|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00932 Cme-Chr3:17806564 Cme06g00075 Cme-Chr6:488395 1.86E-19 dispersed
Cme03g00932 Cme-Chr3:17806564 Cme01g02473 Cme-Chr1:32888430 1.70E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g00932 K02113 - csv:101211740 410.609