Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01012 ATGAAAAGGCTACTCGGGTTGTTCGTCTTGTTTGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTTTAAACGAAGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGACCCTGAAGGGAAACTCGCCTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTTTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTTCATCTTGATGGCTTCGCGCTTAATGGCAGGCTTGGGCGTGGTCTTCTTCAATTGCAGTTTCTTCGTAAACTCTCTCTTGCGAACAACAATCTTACTGGAAATTTAAGTCCCAATAATGCTCGCTTTGAAAATCTTCGAGTGGTTGATTTAAGCGGCAATGGGTTTCATGGGATGATTCCGGATGATTTTTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAACAACAAAATTTCAGGGAAAATCCCGGAAAGTTTGAGCTCTTGTTCCAGTCTTGCTGCTGTAAATTTATCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTAACTGGGCTTCGATCTTTGGATTTGTCTGATAATATTTTGGAAGGTGAAATTGCACCGGAGGTGAAGGGTATGAATAATTTGCGAGCTGTTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGTAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAAAATTCTTTCTCCGGCAACGTTCCGGCGACAATGAAGAAGCTTAGTTTATGCAGTACTATTAATTTAAGAAGAAACTTATTTGAAGGGGAGGTTCCTGAATGGATTGGTGGAATGGAAGGCCTTGAAATCCTGGACCTTTCAGGGAATAGGTTTTCTGGTCCTATTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATCTTTCTGGAAATGGTTTAACTGGTAGCTTGGCAGAGTCCATAGTTCCTTCTCAAAACCTTTCAGCTATGGATCTCGGTCACGGTTCTCTCACCGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAAGCTCTTGCTAATCTTCAAGTTTTAGATTTGTCTCACAATGCATTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAGCTTGCAGGTGTTGAACCTGTGTAAGAACTCATTTGTAGGTGCTATTCCGGAGAGTATTGGAGACCTGAAGGCCTTGGTTTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAAGCATTCCCGAAACACTTGGTGGAGATGTATCGTTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAGGGTGCGGTTCCAAATTCAGTCGGGAACTGTTCTTCACTTGTAACTTTGGACGTGTCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATTGTGGATTTGTCAACAAACAATCTCAGTGGTGCATTGCCGAAACAGTTGGCTAATCTTCCTAACCTTCTTTTATTTAACATTTCTCACAACAATCTGCAAGGTGAACTACCTGCAGGTGGGTTTTTCAATACAATCTCCCCCTCCTCTGTGGCTGGAAATCCTTCTCTTTGTGGTTCTATTGTCAAGAGGTCTTGCCCAGGTGTCCTTCCAAAGCCTATTGTTCTCAACCCCAACTCATCTTCTGACGCGGGTTCTCCTTCATTACCTACAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCCGCACTCATTGCCATTGGTGCAGCAGCTGTTATCCTCGTCGGTGTAGTTGCGATCACTGTCATTAACCTCCATGTTCGGTCATCTGCAAATCGTCCTGAAGCAGCTATCACGTTTTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGAAAGCTTGTCATGTTTTCAGGAGAGCCTGATTTCAGTACCGGTGCACATGCTCTCCTTAACAAGGATTGTGAGCTTGGCCGTGGCGGATTTGGAGCTGTTTACCAAACTGTTCTTCGTGATGGGCATCCCGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAAGTTAGGCACCAAAATCTTGTGGCTTTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTCATATATGAATTTGTGTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTCGGAACTGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTACTGATTGATAGTTCGGGGGAACCTAAAGTTGGAGATTTTGGCTTAGCAAGATTGTTACCGATGCTTGATCGGTACGTGCTGAGCAGCAAGATACAAAGTGCACTAGGATACATGGCACCTGAGTTTGCCTGCAAAACGGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTGGTTCTTGAAGTGGTAACAGGGAAGAGACCTGTGGAATACATGGAAGATGACGTGGTGGTACTTTGCGACATGGTTCGGCGGGAGCTAGAAGAAGGTCAGGTGGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATTAGAAGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACATCTCAAGTGCCATCGAACCGACCCGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATGA 2895 43.63 MKRLLGLFVLFVVVPVLVRSLNPPLNEDVLGLIVFKADIEDPEGKLASWNEDDDNPCNWVGLKCNPRSNRVVELHLDGFALNGRLGRGLLQLQFLRKLSLANNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLANNKISGKIPESLSSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNILEGEIAPEVKGMNNLRAVNLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGNVPATMKKLSLCSTINLRRNLFEGEVPEWIGGMEGLEILDLSGNRFSGPIPSSFGNLQKLKVLNLSGNGLTGSLAESIVPSQNLSAMDLGHGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALANLQVLDLSHNAFSGEISPDIGILSSLQVLNLCKNSFVGAIPESIGDLKALVFLDLSENQLNGSIPETLGGDVSLKELRLEKNLLEGAVPNSVGNCSSLVTLDVSENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSLCGSIVKRSCPGVLPKPIVLNPNSSSDAGSPSLPTTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRELEEGQVEECIDGRLQRNFPLEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19216972 19220057 + MELO3C020010.2.1 Cme03g01012 323023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01012 964 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 1 962 - -
Cme03g01012 964 Pfam Leucine Rich Repeat 192 211 IPR001611 GO:0005515
Cme03g01012 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01012 964 SMART LRR_typ_2 309 332 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 380 404 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 116 140 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 428 452 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 189 212 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 524 548 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 285 308 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 213 237 IPR003591 -
Cme03g01012 964 SMART LRR_typ_2 500 523 IPR003591 -
Cme03g01012 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Cme03g01012 964 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 962 - -
Cme03g01012 964 Pfam Protein tyrosine and serine/threonine kinase 683 949 IPR001245 GO:0004672|GO:0006468
Cme03g01012 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Cme03g01012 964 CDD STKc_IRAK 687 953 - -
Cme03g01012 964 Gene3D Ribonuclease Inhibitor 284 573 IPR032675 -
Cme03g01012 964 SUPERFAMILY L domain-like 116 360 - -
Cme03g01012 964 SUPERFAMILY RNI-like 267 548 - -
Cme03g01012 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Cme03g01012 964 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cme03g01012 964 Pfam Leucine rich repeat 287 343 IPR001611 GO:0005515
Cme03g01012 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Cme03g01012 964 Pfam Leucine rich repeat 406 465 IPR001611 GO:0005515
Cme03g01012 964 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Cme03g01012 964 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Cme03g01012 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme03g01012 Cme10g01254 CCT
Cme03g01012 Cme10g01254 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01012 Cme-Chr3:19216972 Cme10g01254 Cme-Chr10:13287124 0 dispersed
Cme03g01012 Cme-Chr3:19216972 Cme08g00910 Cme-Chr8:5986660 1.26E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64742 PF07714 PK_Tyr_Ser-Thr 3.70E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01012 - - csv:101217024 1779.22