Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01023 ATGGCTCCTTCACCACTCTCTTCTCTTTCAATTTTTTTCCTCATTTTCCTTCCTTCAATCTCTGCTGATTACGGCCACGCCACCTTCTACGGCGGTGGTGACGCTTCTGGCACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGAACGAACACGGCGGCACTTAGTACTGCTCTGTTCAACAATGGCCTCAGCTGTGGCTCTTGCTATGAAATCACTTGCAACAGTGATCCTAAATGGTGTCTTCCAGGAAAAATCATCGTCACCGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTTCAACACTTCGATTTGGCTGAGCCTGCCTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTTCCTGTTTCCTTCCAAAGAGTACCCTGTATGAAGAAGGGAGGAATAAGATTCACCATTAACGGACATTCTTACTTTAACTTAGTTCTAATCACCAATGTGGGCGGCGCCGGAGACGTCCATTCGGTGTCAATAAAAGGTTCGAAAACAGGGTGGCAAGCGATGTCAAGGAATTGGGGACAGAATTGGCAGAGCAACAATTATTTGAACGGACAGAGCCTCTCTTTCCAAGTGACGACCAGCGACGGCCGTACCGTCACTAGCTACGACGCCGTTCCGGGGAACTGGCAGTTCGGTCAGACGTTCGAAGGAGGCCAATTCTAA 735 49.12 MAPSPLSSLSIFFLIFLPSISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPGNWQFGQTFEGGQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19365612 19367225 + MELO3C020005.2.1 Cme03g01023 323034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01023 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cme03g01023 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Cme03g01023 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cme03g01023 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cme03g01023 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Cme03g01023 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Cme03g01023 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cme03g01023 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cme03g01023 244 Gene3D - 19 148 IPR036908 -
Cme03g01023 244 PANTHER EXPANSIN-A15 23 244 IPR002963 GO:0009664
Cme03g01023 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cme03g01023 244 SMART dpbb_1 57 142 IPR007112 -
Cme03g01023 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Cme03g01023 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Cme03g01023 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Cme03g01023 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cme03g01023 244 Gene3D - 151 244 IPR036749 -
Cme03g01023 244 PANTHER EXPANSIN 23 244 - -
Cme03g01023 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01023 Cme-Chr3:19365612 Cme10g01247 Cme-Chr10:13121106 9.57E-148 dispersed
Cme03g01526 Cme-Chr3:24439410 Cme03g01023 Cme-Chr3:19365612 5.37E-116 dispersed
Cme03g01023 Cme-Chr3:19365612 Cme10g00403 Cme-Chr10:2578552 1.28E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01023 - K20628 csv:101217496 491.5