Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01034 ATGTCAAGAGAAAGGGAATCACAAGAAGTGGATGAGATAGGGAAGAAGATAAAGAGAGAAATTGAAAGCAGTAATTTGTTCTATGATCCTAATTTAATGGGAAGAAGAAATAATAATAGTAATAATTTGATTTTGAGCAGCAGTAGTAGTAGTCAAAGTAGTGGGATCAGTAATTTGAATACAATAACACCATGTGCAGCTTGTAAGCTTCTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCTTATTTTTCTCCTCATGAACCACACAAATTTGCTTCTGTTCATAAGGTTTTTGGTGCTAGCAACGTTGCTAAGATGCTAATGGAAGTACCGGAGAATCAAAGAGCGGATGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTTTACGGTTGCATGGGAGCCATTTCTGCTCTTCAACACCAACTTCATACTTTACAATCTGACCTCAATGCCATTACTACTCAAATTTTCAAATACAAATTTACTCATCACCCCATCAATATCCCTTCTTCTCCTAATTTCATCTCCCCCTCCCCCGCTGCTACCCCGCCTGCTGCCCCGCCAACTCCGCCTCATTCTCAGCCGCCTCCGCTCTCTCTTCCACCGCCTCTTCCTCCTTCCTCCTCCTCCTCCTCCGTCTTTTCCCCTCCCATTATTACAACAGCCACTTCTACCACCGTCGTTGAATTAATTAACCCTATTGTGTCAACAATTGTGGGTGTGGGCTATGATCTGGTGGTGTTGAATCAAATAAGGTGTGGAGTGGTTGAAGTTGTGTTGTTTAGGCCAAATGCTCAGCACCTGAAATGA 834 42.33 MSRERESQEVDEIGKKIKREIESSNLFYDPNLMGRRNNNSNNLILSSSSSSQSSGISNLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPENQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLHTLQSDLNAITTQIFKYKFTHHPINIPSSPNFISPSPAATPPAAPPTPPHSQPPPLSLPPPLPPSSSSSSVFSPPIITTATSTTVVELINPIVSTIVGVGYDLVVLNQIRCGVVEVVLFRPNAQHLK 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19570987 19573011 + MELO3C019995.2.1 Cme03g01034 323045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01034 277 MobiDBLite consensus disorder prediction 184 218 - -
Cme03g01034 277 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 238 - -
Cme03g01034 277 PANTHER BNAA03G19070D PROTEIN 38 238 - -
Cme03g01034 277 Pfam Lateral organ boundaries (LOB) domain 64 159 IPR004883 -
Cme03g01034 277 Coils Coil 143 163 - -
Cme03g01034 277 ProSiteProfiles LOB domain profile. 63 164 IPR004883 -
Cme03g01034 277 MobiDBLite consensus disorder prediction 180 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01034 Cme-Chr3:19570987 Cme10g01224 Cme-Chr10:12573051 1.88E-78 dispersed
Cme03g01034 Cme-Chr3:19570987 Cme09g00420 Cme-Chr9:3984698 9.24E-43 transposed
Cme03g01034 Cme-Chr3:19570987 Cme02g02002 Cme-Chr2:26262460 1.62E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41014 PF03195 LOB 6.40E-40 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01034 - - csv:101214467 343.199