Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01049 ATGGCTCCATCTAGCAAAGCTGACAAGAAAGCGGCTGTAGATGCAGCCGCGTGGATGTTTAACGTTGTAACTTCTGTTGGAATTATAATCGTGAATAAGGCTCTCATGGCTACCTATGGCTTCAGCTTTGCCACAACTTTAACAGGTTTGCATTTTGCGACAACCACCTTGATGACTGTCATTCTAAGGTGGCTTGGTTATATTCAAGCATCCCATCTCCCTCTACCAGAGCTTCTAAAATTTGTACTATTTGCCAACTTTTCCATTGTTGGAATGAATGTCAGCCTGATGTGGAATTCAGTGGGATTTTATCAGATTGCAAAGCTAAGTATGATTCCTGTCTCTTGCTTGTTGGAAGTCGTCTTGGACAAGATTCGGTACTCCAGAGATACGAAGTTGAGCATTGCAGTTGTTCTCTTAGGTGTTGGAGTATGCACTGTTACTGATGTCAGTGTTAATACCAGAGGCTTTGTTGCAGCCGTTATCGCCGTGTGGAGCACTTCTCTGCAGCAATACTATGTGCATTTCCTCCAACGGAAGTATTCGCTGAGTTCCTTCAACTTGTTAGGACATACGGCTCCAGCACAGGCCGGCTCCCTTCTATTGGTCGGACCTTTTCTCGACTACTGGTTGACGAACAAAAGGGTAGATCGATATGACTACAATTTAGCCTCTATTATTTTCATAATTCTGTCATGCTCCATTGCTGTGGGAACCAATCTTAGCCAATTTATCTGCATAGGCAGATTCACAGCTGTTTCATTCCAAGTTCTTGGCCACATGAAAACAATCCTTGTTTTGATCATGGGATTCTTCTTCTTTGGAAAGGAAGGGCTTAACATGCAGGTGGTTTTGGGTATGATCATAGCGGTCATCGGGATGATTTGGTACGGTAATGCCTCGTCGAAACCCGGTGGAAAAGAACGTCGGAGCCACACGCTCCCAACAGCTAGACAACAAAAACATGGTGGTTTAACAGATTCTACCGAACATGATGGGAAGGTCTAA 1008 44.15 MAPSSKADKKAAVDAAAWMFNVVTSVGIIIVNKALMATYGFSFATTLTGLHFATTTLMTVILRWLGYIQASHLPLPELLKFVLFANFSIVGMNVSLMWNSVGFYQIAKLSMIPVSCLLEVVLDKIRYSRDTKLSIAVVLLGVGVCTVTDVSVNTRGFVAAVIAVWSTSLQQYYVHFLQRKYSLSSFNLLGHTAPAQAGSLLLVGPFLDYWLTNKRVDRYDYNLASIIFIILSCSIAVGTNLSQFICIGRFTAVSFQVLGHMKTILVLIMGFFFFGKEGLNMQVVLGMIIAVIGMIWYGNASSKPGGKERRSHTLPTARQQKHGGLTDSTEHDGKV 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19742186 19747174 + MELO3C019980.2.1 Cme03g01049 323060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01049 335 PANTHER SOLUTE CARRIER FAMILY 35 7 314 - -
Cme03g01049 335 MobiDBLite consensus disorder prediction 302 335 - -
Cme03g01049 335 Pfam Triose-phosphate Transporter family 23 297 IPR004853 -
Cme03g01049 335 PANTHER - 7 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01049 - - - csv:101221215 627.476
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01049 Cme10g01458 CCT
Cme03g01049 Cme10g01458 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01049 Cme-Chr3:19742186 Cme08g00468 Cme-Chr8:2861349 0 dispersed
Cme03g01049 Cme-Chr3:19742186 Cme09g01686 Cme-Chr9:21540286 2.29E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g68 . Blo13g00800 . . . . Bma03g00241 . Cmo04g00143 Cmo04g01174 Cma04g01108 Cma04g00146 Car04g00139 . . . Cpe01g00122 . . . . . . . Cla07g00409 Cam07g0443 Cec07g0494 Cco07g0453 Clacu07g0441 Cmu07g0481 Cre07g0784 Cone1ag1663 Cone5ag0192 . . . . Chy10g00398 Cme10g01458 . Blo04g00226 Bda14g00243 . . . . . . . . . . . . Cpe01g01028 . . . . . . . . . . . . . . . Lsi04g01092 Csa05g00829 . Cme03g01049
Vvi18g1339 Blo01g01742 Blo12g00774 . Bda03g00404 Bpe02g00201 Bpe04g00368 Bma04g00384 Bma01g02520 Cmo04g02574 Cmo15g00586 . . . . . . Cpe13g00696 Bhi04g01752 . . . Hepe02g2810 . Lcy10g1367 Cla08g00750 Cam08g1177 Cec08g0767 Cco08g0875 Clacu08g0883 . Cre08g0685 Cone4ag1470 Cone7ag1470 . . . . . Cme03g01049 . . Bda11g00862 Bda01g01473 . . Bma01g00781 . . . . . . Car04g02367 Car15g00539 Cpe01g02129 . . . . . . . . . . . . . . . Lsi08g00571 . Chy03g00491 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001292 1 4 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 8 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01049 Cme_Chr03 FPKM 3.611111 5.734696 2.29531 1.231178 2.795584 2.911931 1.274786 1.078717 0.511221 0.617819