Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01066 ATGAGAGCATATCAAATTCATTGTCATTTGGCCGGTCATCCCAACCTACCCTCGTCCATGGCAGTTCACTCTCATATTGAGAGAGTGCTCTGGACCCACGACCAAATTTCGGCTCGAGTCTCTGACCTTGCCTCCCAAATCTCCATCGCCTTCCACGGAGCCTCTTCCCCGCCAGTCCTCGTCGGCGTCGCCACCGGAGCTTTCATCTTCCTCGCCGACTTGGTCCGCCACATCAATATTCCAATCGCTGTTGACTTCGTTCGTGTCGAATCATATGGTTTCGGTACTCACTCTAATGGTGCTCCTACAATCTCATCGGACTTGAAGGTCGATGTTAAGAACAAGCATGTAATTCTGGTTGAGGATATTGTAGATACTGGAAATACTTTATCATGTCTCATTGCTCACATGGAGGTAAAAGGAGCATCATCTGTATCAGTATGCACTTTTCTTGATAAACCAACAAGACGACAAGTTAATTTTCAGCTAGTAGGCGAAGGAAAGTTCTACTCCGGATTCCAATGTCCAGATTATTTTGTGGTGGGGTATGGAATGGACTTTGCGGAGCTGTACAGAAATTTACCATATGTTGGCATTTTGAAACCTGAATGTTACCAGTGA 621 45.89 MRAYQIHCHLAGHPNLPSSMAVHSHIERVLWTHDQISARVSDLASQISIAFHGASSPPVLVGVATGAFIFLADLVRHINIPIAVDFVRVESYGFGTHSNGAPTISSDLKVDVKNKHVILVEDIVDTGNTLSCLIAHMEVKGASSVSVCTFLDKPTRRQVNFQLVGEGKFYSGFQCPDYFVVGYGMDFAELYRNLPYVGILKPECYQ 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20026777 20029534 - MELO3C019966.2.1 Cme03g01066 323077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01066 206 Gene3D - 16 206 IPR029057 -
Cme03g01066 206 TIGRFAM HGPRTase: hypoxanthine phosphoribosyltransferase 29 200 IPR005904 GO:0004422|GO:0006166
Cme03g01066 206 PANTHER HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE 21 206 - -
Cme03g01066 206 SUPERFAMILY PRTase-like 14 205 IPR029057 -
Cme03g01066 206 CDD PRTases_typeI 57 173 IPR000836 -
Cme03g01066 206 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 21 206 - -
Cme03g01066 206 Pfam Phosphoribosyl transferase domain 35 187 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01066 K00760 hprT, hpt, HPRT1; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] - csv:101219321 363.614
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme11g00452 . 110 594 PRT Gene Family AT2G16570 85.0 5.3e-241 830.5
Cme11g00452 . 109 594 PRT Gene Family AT4G34740 85.4 1.1e-241 832.8
Cme11g00452 . 114 567 PRT Gene Family AT4G38880 75.4 3.4e-197 684.9
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme06g02603 . 6 99 PRT Gene Family AT4G22570 88.3 1.7e-44 175.3
Cme03g02097 . 83 175 PRT Gene Family AT4G22570 80.6 1.7e-39 158.7
Cme03g01606 . 11 100 PRT Gene Family AT4G22570 77.8 4.5e-37 150.6
Cme09g01640 . 6 124 PRT Gene Family AT4G22570 63.9 4.5e-37 150.6
Cme06g02603 . 7 98 PRT Gene Family AT4G12440 88.0 2.1e-41 164.9
Cme03g02097 . 79 174 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g01066 . 20 205 PRT Gene Family AT1G71750 62.9 4.6e-67 251.1
Cme01g01088 . 16 468 PRT Gene Family AT1G55810 85.7 1.9e-225 778.5
Cme06g01664 . 19 482 PRT Gene Family AT1G55810 73.5 1.0e-199 693.0
Cme01g01088 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Cme06g01664 . 80 482 PRT Gene Family AT3G27440 75.2 2.5e-179 625.2
Cme06g01664 . 1 482 PRT Gene Family AT3G27190 86.1 2.5e-247 851.3
Cme01g01088 . 3 467 PRT Gene Family AT3G27190 74.1 2.5e-207 718.4
Cme08g02442 . 7 229 PRT Gene Family AT3G53900 77.6 2.7e-103 372.1
Cme01g01088 . 1 468 PRT Gene Family AT4G26510 83.8 2.2e-232 801.6
Cme06g01664 . 11 482 PRT Gene Family AT4G26510 75.2 3.4e-209 724.5
Cme06g01664 . 1 482 PRT Gene Family AT5G40870 86.3 2.7e-246 847.8
Cme01g01088 . 44 470 PRT Gene Family AT5G40870 80.1 5.6e-207 717.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011220 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01066 Cme_Chr03 FPKM 0.0 0.0 0.241988 0.388728 0.0 0.0 0.0 0.573166 0.317672 0.167347