Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01068 AAAACCTTCGATTTTCTATTTTTAGAGAGTTTAGAAACCCTAGTGTTCTTCCTCCCTGTTCGATCGCAATCGCTAACTCCTTTACATAACTATTCAATTGTATTCCCTCGATTTTTTTTTGTTTTTTTCTTCTCACGAGACGGCATGGCGGCTACAGTTCCGGCTCCGGCGACGGCCGCTACAGTTCAAACGGCGGTGATTCCTCCTCCGACGGGAGCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCTTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTATCCATTAGGGTTTGCAGGGATCAGACACGCAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCACCAGGATGCTGTCAATGCCATGGAGCATTTGAATTTCACGCCTGTTAATGGGAAGCCTATCAGGATTATGATATCTAATCGAGATCCTAGCATTCGGAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACTTGTCAATTGATAACAAGGCGTTACGTGATACATTTGCTGCTTTTGGTCCTGTCCTTTCTTGTAAAGTTGCTGTAGATAGCAATGGACAGTCAAAAGGTTACGGATTTGTGCAATTTGAAAGTGAGGAATCAGCGGAAATTTCCATAGAAAAGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGGCATTTTATTCGACACCAAGAAAGGATTCGGGCAAATGGATCACAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCTGCACATGGTACCATTACTAGTGCAATTGTCATGACTGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTCCAGAACACAGACTCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACCGTCCTTGGAGATGACAAGATTTTGTACGTAGGTAGGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTATATAAAAAATCTTGATGACCATATTGATGATGAGAAACTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGACTGAGCAAAGGGTCTGGTTTTGTTGCCTTTTCCTCACCAGATGAAGCAACCAAAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAGGAAGCCTCTCTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAGGCTCGGTTGCAGGCACAATTTGCTCAAATCCGAGCAACTGGTGGAATATCATCTTTGCCTTCCGGAATTCCAGGATTTCATCCAGGGGCACGAGTTTCACCTCAGCAAATGTATTATGGTCAGGGAAACCCAGGGCTAGCGCCCCCGCAGCCTGCTGGATATGGTTTCCAGCCTCAACTCATGAGTGGGATGCGACCTGGTATGGGCCCAAACTTCCTCATGCCATACCAATTTCAAAGGCAAGGACAGCCTGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAACCTTTACCGCAGCAGCAGTTACCACTCCGTGGCTTCGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGATTAGAGTCACCTGTCCTGCCCCAAGGTCTTGTTAGTCCGATGATGCCTCTAGCTTTTGATGGTTCTGGAGTGTCTAGCCCTCCCAATGACATCCAGCGAACAAGGGCCGTGCCTACCTCAACACTTGCTTCTGCATTAGCTTCCGCTACACCAGAAAACCAACGTGTGATGCTCGGCGAGCAGTTGTATCCACTTGTGGAACGTCTCGAGCCAAGTCATGCAGCAAAGGTTACTGGAATGTTGCTGGAGATGGACCAACCAGAGGTACTTCATCTCATCGAGTCACCTGAAGACTTGAAAAGTAAGGTGGCTGAGGCAATGGAAGTCCTTCGCAAAGCTTCGTCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA 2100 45.43 KTFDFLFLESLETLVFFLPVRSQSLTPLHNYSIVFPRFFFVFFFSRDGMAATVPAPATAATVQTAVIPPPTGAVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYANVFIKNLDLSIDNKALRDTFAAFGPVLSCKVAVDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTDSAAAAVEKLNGTVLGDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGIPGFHPGARVSPQQMYYGQGNPGLAPPQPAGYGFQPQLMSGMRPGMGPNFLMPYQFQRQGQPGPRSGMRRGGNSQPLPQQQLPLRGFGQGFRYMNNARNGLESPVLPQGLVSPMMPLAFDGSGVSSPPNDIQRTRAVPTSTLASALASATPENQRVMLGEQLYPLVERLEPSHAAKVTGMLLEMDQPEVLHLIESPEDLKSKVAEAMEVLRKASSEPELSDQLGALALTK 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20043267 20046555 - MELO3C019964.2.1 Cme03g01068 323079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01068 699 SUPERFAMILY RNA-binding domain, RBD 260 445 IPR035979 GO:0003676
Cme03g01068 699 Gene3D - 603 684 - -
Cme03g01068 699 Gene3D - 81 162 IPR012677 -
Cme03g01068 699 Gene3D - 345 451 IPR012677 -
Cme03g01068 699 SMART rrm2_1 172 244 IPR003954 GO:0003676
Cme03g01068 699 SMART rrm2_1 262 334 IPR003954 GO:0003676
Cme03g01068 699 SMART rrm2_1 366 437 IPR003954 GO:0003676
Cme03g01068 699 SMART rrm2_1 84 157 IPR003954 GO:0003676
Cme03g01068 699 PANTHER RNA BINDING PROTEIN 83 687 - -
Cme03g01068 699 SMART poly_2 619 682 IPR002004 GO:0003723
Cme03g01068 699 SMART rrm1_1 172 244 IPR000504 GO:0003723
Cme03g01068 699 SMART rrm1_1 84 157 IPR000504 GO:0003723
Cme03g01068 699 SMART rrm1_1 366 438 IPR000504 GO:0003723
Cme03g01068 699 SMART rrm1_1 262 335 IPR000504 GO:0003723
Cme03g01068 699 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 83 680 IPR006515 GO:0003723
Cme03g01068 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Cme03g01068 699 SUPERFAMILY PABC (PABP) domain 517 686 IPR036053 GO:0003723
Cme03g01068 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 435 IPR000504 GO:0003723
Cme03g01068 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 241 IPR000504 GO:0003723
Cme03g01068 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Cme03g01068 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 263 331 IPR000504 GO:0003723
Cme03g01068 699 CDD RRM1_I_PABPs 84 163 - -
Cme03g01068 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 243 IPR000504 GO:0003723
Cme03g01068 699 CDD RRM3_I_PABPs 260 340 - -
Cme03g01068 699 CDD RRM4_I_PABPs 364 442 - -
Cme03g01068 699 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 607 684 IPR002004 GO:0003723
Cme03g01068 699 CDD RRM2_I_PABPs 169 245 IPR045305 -
Cme03g01068 699 Coils Coil 334 354 - -
Cme03g01068 699 MobiDBLite consensus disorder prediction 526 550 - -
Cme03g01068 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 442 IPR000504 GO:0003723
Cme03g01068 699 SUPERFAMILY RNA-binding domain, RBD 83 248 IPR035979 GO:0003676
Cme03g01068 699 Gene3D - 163 250 IPR012677 -
Cme03g01068 699 PRINTS Paraneoplastic encephalomyelitis antigen family signature 261 276 IPR002343 GO:0003723|GO:1990904
Cme03g01068 699 PRINTS Paraneoplastic encephalomyelitis antigen family signature 370 385 IPR002343 GO:0003723|GO:1990904
Cme03g01068 699 PRINTS Paraneoplastic encephalomyelitis antigen family signature 385 397 IPR002343 GO:0003723|GO:1990904
Cme03g01068 699 PRINTS Paraneoplastic encephalomyelitis antigen family signature 352 369 IPR002343 GO:0003723|GO:1990904
Cme03g01068 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 261 339 IPR000504 GO:0003723
Cme03g01068 699 Coils Coil 440 460 - -
Cme03g01068 699 Pfam Poly-adenylate binding protein, unique domain 615 679 IPR002004 GO:0003723
Cme03g01068 699 Gene3D - 251 344 IPR012677 -
Cme03g01068 699 PANTHER POLYADENYLATE-BINDING PROTEIN 83 687 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01068 Cme-Chr3:20043267 Cme06g01347 Cme-Chr6:11512384 0 dispersed
Cme06g00357 Cme-Chr6:2206956 Cme03g01068 Cme-Chr3:20043267 1.01E-09 dispersed
Cme03g01068 Cme-Chr3:20043267 Cme01g00061 Cme-Chr1:465786 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01068 K13126 - csv:101219081 1186.79