Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01093 ATGAACTTCCATACCCATTTGTTTCGTTGCTTTATTGCTTTTGCTTTCGCAGTGTCTTTCTCGGAGGCTGCTATAACTCTAGGCTCTTCTTTGAGAGCTTCGGTTCCCAATCAGGCATGGAATTCCTCTAATGGAGATTTCTCTTTGGGTTTCACTCCATTGGATTCTTCTTCCGGTTCTTCTTTTAAAGTCGGCATAGTCTTCACTGGTGGCGTTCCTACTATATGGTCTGCTGGTGGCGGCGCTACGGTGGATGCTTCCAGTGCACTTCACTTCCAATCTGACGGTAACCTCCGTCTCGTCAGTGGTTCTGGTGCCGTTGTTTGGGAATCTAACACCACTGGCCTTGGCGTTTCCTCCGCTGTGCTCGAGGATACCGGCAACCTCGTCCTTCTAAATAGTAGTTCCCAGCCGGTTTGGTCTTCGTTCGATCATCCGACCGATACGATTGTTCCATCGCAGAATTTTACTGTGGGGATGGTACTGCGATCTGGTCAGTATTCTTTTAAATTACTTGATGTTGGGAATATAACTCTGACTTGGAATGGAGATGAAGGTGATGTTGTCTATTGGAATCATGGGTTAAATACATCGATCGGTGGAACTTTGAATTCTCCTAGTTTACGATTAGATCCTATTGGGATGTTGGCTGTTTTTGATACAAGAATACCAGCTGGTTCATTTGTAGCTTATAGCAACGATTATGCTGATAATGCTGAGCCTACTTTTAGGTTTCTAAAGTTAACAAGAGATGGAAATTTAGAGATTCATAGTGTTGTTAGAGGAAGTGGGTCTGAAACAGCAGGATGGGAAGCTATTCCTGACAGATGTCAGATATTTGGGTTTTGTGGGGAACTTAGTATTTGTAGTTATAATGATACAAGTCCAACTTGTAGTTGCCCATCTGCAAATTTTGAACCTTTTGATTCAAATGATTGGAAGAAAGGATGTAAGAGGAAGTTGGATCTCGGAAATTGTAGCAGTGGCATTAACATGTTGCCATTGCAGAATACAAAGCTTTTACAATATCCATGGAATTTTCCAGGCATACAGTACTCCATGCAGATATCGGGGTGTCAATCAAATTGTCGACAAAGTGCTGCCTGTGATTCTTCTACTGCACCATCAGACGGGAGTGGGTTTTGTTATTACATATCTTCAGGTTTTATAAGGGGATATCAGAGTCCTGCTTTGCCAAGCACTTCATTCCTCAAGGTCTGTGGGGATGTGCTCCCAAATCAACAGGAATCTTCAGATGTTTCGAGGCCGGGTGATAAGAATGTGAAGACTTGGGTTTTGGCTGTTGTGGTTTTGGTTACCCTTTTTGCCATGATTGCTTTTGAGGCTGGTTTATGGTGGTGGTGTTGTAGACACACCTCCAATTTTGGAGGGATGTCCAGCCAATACACTCTTCTTGAGTATGCTTCTGGTGCTCCAGTGCAGTTCTCGTATAAAGAACTCCATCGTGTGACGAACGGTTTCAAGGACAAGCTTGGAGCTGGTGGATTTGGTGCTGTTTATAAAGGGGTTCTTACTAATAGGACAGTTGTTGCAGTGAAGCAACTCGAGGGAATTGAGCAGGGAGAGAAGCAATTTAGGATGGAGGTAGCAACTATAAGTAGCACACACCATTTGAATCTGGTGAGATTGGTTGGTTTTTGCTCAGAAGGACGGCGTAGGCTATTAGTATATGAGCTCATGAAGAATGGCTCTCTTGATGGATTGCTATTCAAGGGGGAAGAAGGGCAATCTGGGAAGTTCCTTAGCTGGGAAGATCGTTTCAAAATTGCTGTTGGAACTGCCAAGGGGATCACATATCTTCATGAGGAGTGCCGTGATTGCATCATTCATTGTGATATAAAGCCAGAGAACATACTCTTAGATGAGTATTTAAATGCCAAAGTCTCAGATTTTGGTCTGGCAAAGCTCATTAATATGAAAGATCACAGATATCGAACCTTGACTAGCGTAAGAGGGACGAGGGGATATTTGGCACCTGAATGGCTAGCAAACCTGCCACTGACTTCAAAGTCTGATGTTTTCAGCTATGGTATGGTTCTTTTAGAGATCGTGAGTGGACGAAGGAATTTTGATGTTTCTGAAGAAACAAATCACAAGCGGTTCTCTTTGTGGGCTTACGAAGAGTTCGAAAAAGGAAATCTCATAGAAATTGTTGACAAAAGACTTGTGGATCAAGAGATTGATATGGACCAAGTTAGTAGGGTGGTTCAGGTGAGCTTTTGGTGCATCCAGGAGCAACCATCTCAGAGGCCAACAATGGGAAAAGTCGTGCAGATGATCGAAGGAGTCATCGACATCGAGAGGCCTCCTGCACCAAAAGTAACATCCATGGTTTCCGCAAGTGGAACAAGCACTTATATCAGCAGCAATTTGAGCAATTTCTCCACCACACCCACAACCGAAACACCGGCCTCATTTTCGTCATCTCTTGCTGCACTAGACATGACTCCTGGTGGCAGCAAGATTGAGAAAACAAGTTCATCCCTTCTTCAATCAAGGTACGACTAA 2529 43.65 MNFHTHLFRCFIAFAFAVSFSEAAITLGSSLRASVPNQAWNSSNGDFSLGFTPLDSSSGSSFKVGIVFTGGVPTIWSAGGGATVDASSALHFQSDGNLRLVSGSGAVVWESNTTGLGVSSAVLEDTGNLVLLNSSSQPVWSSFDHPTDTIVPSQNFTVGMVLRSGQYSFKLLDVGNITLTWNGDEGDVVYWNHGLNTSIGGTLNSPSLRLDPIGMLAVFDTRIPAGSFVAYSNDYADNAEPTFRFLKLTRDGNLEIHSVVRGSGSETAGWEAIPDRCQIFGFCGELSICSYNDTSPTCSCPSANFEPFDSNDWKKGCKRKLDLGNCSSGINMLPLQNTKLLQYPWNFPGIQYSMQISGCQSNCRQSAACDSSTAPSDGSGFCYYISSGFIRGYQSPALPSTSFLKVCGDVLPNQQESSDVSRPGDKNVKTWVLAVVVLVTLFAMIAFEAGLWWWCCRHTSNFGGMSSQYTLLEYASGAPVQFSYKELHRVTNGFKDKLGAGGFGAVYKGVLTNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLVGFCSEGRRRLLVYELMKNGSLDGLLFKGEEGQSGKFLSWEDRFKIAVGTAKGITYLHEECRDCIIHCDIKPENILLDEYLNAKVSDFGLAKLINMKDHRYRTLTSVRGTRGYLAPEWLANLPLTSKSDVFSYGMVLLEIVSGRRNFDVSEETNHKRFSLWAYEEFEKGNLIEIVDKRLVDQEIDMDQVSRVVQVSFWCIQEQPSQRPTMGKVVQMIEGVIDIERPPAPKVTSMVSASGTSTYISSNLSNFSTTPTTETPASFSSSLAALDMTPGGSKIEKTSSSLLQSRYD 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20353179 20356003 - MELO3C019944.2.1 Cme03g01093 323104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01093 842 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 6 828 - -
Cme03g01093 842 ProSiteProfiles Bulb-type lectin domain profile. 22 144 IPR001480 -
Cme03g01093 842 ProSiteProfiles Protein kinase domain profile. 492 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01093 842 CDD B_lectin 37 146 IPR001480 -
Cme03g01093 842 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Cme03g01093 842 Gene3D - 21 145 IPR036426 -
Cme03g01093 842 Pfam D-mannose binding lectin 75 158 IPR001480 -
Cme03g01093 842 Gene3D - 146 272 IPR036426 -
Cme03g01093 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Cme03g01093 842 PIRSF SRK 1 819 IPR024171 GO:0004674
Cme03g01093 842 SMART blect_4 30 146 IPR001480 -
Cme03g01093 842 SMART serkin_6 492 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01093 842 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Cme03g01093 842 Gene3D Phosphorylase Kinase; domain 1 462 566 - -
Cme03g01093 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 170 IPR036426 -
Cme03g01093 842 Gene3D Transferase(Phosphotransferase) domain 1 567 778 - -
Cme03g01093 842 Pfam Protein kinase domain 495 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme03g01093 842 PANTHER OS07G0415500 PROTEIN 6 828 - -
Cme03g01093 842 CDD STKc_IRAK 498 769 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01093 - - - csv:101211415 1592.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01093 Cme-Chr3:20353179 Cme04g02659 Cme-Chr4:32269050 1.45E-131 dispersed
Cme05g00130 Cme-Chr5:870434 Cme03g01093 Cme-Chr3:20353179 2.47E-15 dispersed
Cme06g01057 Cme-Chr6:7684990 Cme03g01093 Cme-Chr3:20353179 6.73E-12 dispersed
Cme03g01093 Cme-Chr3:20353179 Cme03g01614 Cme-Chr3:25043411 1.32E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1290 . . . . . . . . . . . . . . . . Cpe13g00715 . . . . . . . . . . . . . . . . . . . . . Cme03g01093 . . . Bda01g01467 . . . . . . . . . . Car15g00518 . . . . . . . . . . . . . . . . Lsi08g00607 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010545 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64744 PF00069 Pkinase 3.60E-50 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01093 Cme_Chr03 FPKM 10.329803 11.347087 8.194715 8.160128 11.43815 10.191738 12.226534 9.944895 8.149744 9.131356