Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01094 ATGAAACTGCTTTTCTCTTTGAAATTACCTCTGAAACTCCACTCCCTCATCATTCCCTCGCTCTCTATCCCCACTTCCTTACTCAAGTTTTCACCTCCTCACCCTCCCCTCAAATTCCCCACAACCAGATTTCCGTCTCCAAAATCAATGGCGACAGCTATGTCCTCCCCTAAACCACTTGTTCAAGTCAAGGACAACATCGAACTCACTGAAACCGAGGAGAAGATTTTCCACAGGCTTCTCGGGACCCTTCGTCACTTCAATCTCCAAACCCAACTTCGTGTTGCTGGCGGTTGGGTTCGTGATAAGCTTCTCGGCAAAGATTGTTACGATATTGATATCGCTCTGGATAATATGTTGGGTAGCGAGTTTGTGGACAAGGTTAGAGAATATTTGTTGACAGTTGGGGAAGAAGCGCAAGGAGTCGCTGTTATTCCATGTAACCCTGACCAATCAAAACATCTAGAAACAGCAAGGATGCGTATCTTTGATATGTGGATTGATTTTGTAAACTTGAGGTGTGAGGAATACAGTGAGAATAGGCGTATTCCTACTAAGCAAAAGTTTGGGACGGCAGAGGAGGATGCATATAGAAGGGATTTAACAATCAATAGTTTGTTCTACAATATCAACTTGAGCATAGTCGAAGATTTTACGAAAAGAGGCATTTCGGATTTGAAGTTTGGGAAAATTGTGACTCCTTTACCGGCTAAAGCTACATTTATGGATGATCCACTTCGAGTCCTTCGAGCCATACGTTTCTGTGCAAGATTTGAATTCACATTGGACGAAGAACTGAAGGAAGCTGCTGCTTGTGAAGAAGTAAAGGCTGCTCTTGCTGCAAAGATTAGCAGGGAACGTATTGGAGTTGAGATTGATCTCATGATTGCTGGGAATCAGCCAGTAAAAGCAATGAGCTACATTTCTGATTTGACTTTATTTTGGACTGTCTTTACTCTTCCTTCTAACACTGAACCTGAAATATCTGAGGTGTGTAATAGGCTTTGCATTGCTTGTCTGGATGCCACGTGGAACCTCATTCAACATATCAATTGCTTTACCTTTAGTAAAAGGCTCTCTTTGTATGCTTCTCTCTTCCTTCCATTCAGAAAATTCACATTTAAAGATAAGAAATCCAAAAAGATTCCTGTTGTCAACTATATTTTCCGGGATTCTCTCAAGCGAAAAGTTAGCGATGCTGAAACAGTTGTTAACGTACATCAGACCTTGGAGAAGTTTTTGTCCTTGATTCCTCTTCTTGTATCTAAAGAGGAAATTCAACCCAATGGATTTGATTGGGGTGTTGAATGTGCAGATGTTCCTGCTACGTCAAGGATTCGAGTATTAACTGGGCTTCTTTTGCGGGAAATTAAAGACTTCTGGCCTGTAGCTTTATTGATGGCCACCTTGTTATATCCTGCTAATGTAGATTATGCACAAGATCTGTTAAACCAAAACTTTGAACTGGAAAAGCGAAAAGAACTGTTTGACGTCATTTACAACGAGACTGTTAAACTAGGTTTGGAAAATGTGTGGGAGATGAAACCTTTGGTGAATGGGAAGGAGATTATGAACATTTTGCAACTGAAAGCAGGAGGACCACTTGTTAGAGAATGGCAACAGAAGATACTTGCATGGCAGCTCGCACACCCCTCAGGAACATCCGAAGAATGCATCGACTGGATTCGGGAAACACATTCGAAGCGTGTTAAGTTGGATGAATGA 1725 41.62 MKLLFSLKLPLKLHSLIIPSLSIPTSLLKFSPPHPPLKFPTTRFPSPKSMATAMSSPKPLVQVKDNIELTETEEKIFHRLLGTLRHFNLQTQLRVAGGWVRDKLLGKDCYDIDIALDNMLGSEFVDKVREYLLTVGEEAQGVAVIPCNPDQSKHLETARMRIFDMWIDFVNLRCEEYSENRRIPTKQKFGTAEEDAYRRDLTINSLFYNINLSIVEDFTKRGISDLKFGKIVTPLPAKATFMDDPLRVLRAIRFCARFEFTLDEELKEAAACEEVKAALAAKISRERIGVEIDLMIAGNQPVKAMSYISDLTLFWTVFTLPSNTEPEISEVCNRLCIACLDATWNLIQHINCFTFSKRLSLYASLFLPFRKFTFKDKKSKKIPVVNYIFRDSLKRKVSDAETVVNVHQTLEKFLSLIPLLVSKEEIQPNGFDWGVECADVPATSRIRVLTGLLLREIKDFWPVALLMATLLYPANVDYAQDLLNQNFELEKRKELFDVIYNETVKLGLENVWEMKPLVNGKEIMNILQLKAGGPLVREWQQKILAWQLAHPSGTSEECIDWIRETHSKRVKLDE 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20367852 20374128 - MELO3C019943.2.1 Cme03g01094 323105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01094 574 SUPERFAMILY Nucleotidyltransferase 73 227 IPR043519 -
Cme03g01094 574 SUPERFAMILY Poly A polymerase C-terminal region-like 231 565 - -
Cme03g01094 574 CDD NT_ClassII-CCAase 79 227 IPR002646 GO:0003723|GO:0006396|GO:0016779
Cme03g01094 574 Gene3D - 231 427 - -
Cme03g01094 574 Gene3D Beta Polymerase, domain 2 61 227 IPR043519 -
Cme03g01094 574 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 56 572 - -
Cme03g01094 574 Pfam Poly A polymerase head domain 93 231 IPR002646 GO:0003723|GO:0006396|GO:0016779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01094 - - - csv:101216479 1053.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01094 Cme-Chr3:20367852 Cme06g02342 Cme-Chr6:30777371 2.98E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010577 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01094 Cme_Chr03 FPKM 31.847517 33.439991 34.583469 23.853292 29.150146 19.773409 25.390825 23.181467 19.533356 20.816568