Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01095 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCGTATTCATGCTCGCTTTCGCATTCTTCATCATCTTCTTCACTGGCTTCCTCGAATTTCCACCGGCATCCACTTCGATCGTACCGCCCACCGACGATCTGAATCTCTCCCCACCTCAGTTTGCTTCTGACCCTTTCACTGATTTGATCGCAGCTTTCAAGAAATGGGACTCTCAGGTGGGCTGTGATCGGTTCCGGGAGAAAATTGGCGGCGGTTTGAGTAATGGGTCTTCGTCGGTTTCGCTGCAGCAAGTCGGTGGCGACTCTAATTCGGAATGTGGCAGGCTGAAACTGAATCATGTTGCTGTTTTGGTGAAAGGATGGACTTGGATTCCTGATAATTTAGATAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCTGATAAGCCGGACGCCTTGTTATTCGAAACCAGTACGCCTCCCCGACAGAGGCGCAGAGGAAAACCTCTTCGCATATACATGGATCTTGAGGCTGGTCGGAAGCGCTCAGGTTTTGAGGATCTATTTGTTAGTTATCATGCAGAAGATGATGTTCAGGCAACTTATGCAGGAGCACTCTTTCACAACGGTCGAAACTATCACATATCTTCTTCTAAAAACAATGATACACTCGTTTATTGGTCGTCATCTCGTTGTCTTCCCCAAAGGAATCAGCTTGCTAAGAAGCTTCTAAGTTTGCTGCCTCACCATTCTTTTGGCAAATGCTTGAACAACGTAGGTGGACTCGACATGGCTCTTTCAATTTACCCTGAATGTGCAAATGATGCTAGCGTCGCCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCACTACAAATTCGTTCTTGCAATCGAAAACACAATGACTGAGAGTTACGTAACTGAGAAGCTATTTTACGCGCTAGATTCTGGTTCCATTCCGATCTATTTTGGTGCCCCTAATGTCTGGGACTTTGTTCCTCCACATTCTATCATTGATGGGTCTAAATTCAGCTCTTTAGAAGAGTTGGCTTCTTATGTAAAACGACTTGCGGATGATCCAGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCATTAGGTAACTATAGAAGGACCCGAGCTGCGAGCCTCGACACACTGCCATGTCGGGTGTGCGATGCAGTGAGCAGAAGGGGTGGTAGAAATGGTTGA 1221 46.44 MLLKPFNTVAVVFMLAFAFFIIFFTGFLEFPPASTSIVPPTDDLNLSPPQFASDPFTDLIAAFKKWDSQVGCDRFREKIGGGLSNGSSSVSLQQVGGDSNSECGRLKLNHVAVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALLFETSTPPRQRRRGKPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQATYAGALFHNGRNYHISSSKNNDTLVYWSSSRCLPQRNQLAKKLLSLLPHHSFGKCLNNVGGLDMALSIYPECANDASVAPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSIPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCDAVSRRGGRNG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20388597 20391876 - MELO3C019942.2.1 Cme03g01095 323106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01095 406 Gene3D - 171 379 IPR038577 -
Cme03g01095 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 13 405 - -
Cme03g01095 406 PIRSF FucT_plant 1 406 IPR017177 -
Cme03g01095 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 13 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cme03g01095 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 101 400 - -
Cme03g01095 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00052 Cme-Chr1:410903 Cme03g01095 Cme-Chr3:20388597 1.85E-14 dispersed
Cme03g01095 Cme-Chr3:20388597 Cme06g01334 Cme-Chr6:11263296 1.11E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01095 K14412 - csv:101216230 779.245