Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01109 ATGAACACCATGGGCATCTTTGAGGATATTAGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCTGGAGAACAAGAGACAGCTCAGGAGCATGAAGCTGAAGCTGTTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGTGACCGAATGCTTTTGAGGCGACTCAAAGAACAGAGCAAAGAGAAGGAAGGTGCTGATAGTTCAAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGGTTCGTTTATGGGATTATTCCTGAGAAAGGAAAACCAGTCAGTGGAGCTTCTGATAATCTTCGTGCATGGTGGAAGGAAAAGGTTAGATTCGATAGAAATGGCCCTGCAGCAATTGCCAAATATCAGGCAGACCACGCAATTCCAGGAAACAACGATGACTGCAATACAGTGGCGTCCACTCCTCACACCTTACAAGAGCTTCAAGATACAACCCTTGGATCACTTTTGTCAGCTCTGATGCAGCACTGTGATCCACCTCAGAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCAACTGGAAATGAGGAGTGGTGGCCTGAGCTAGGACTACCTAAGGACCAGGGGCCACCTCCTTACAAGAAGCCCCATGATTTGAAGAAGGCTTGGAAAGTCAGCGTTCTCACTGCTGTGATTAAGCATATGTCACCTGATATTGCCAAGATTCGCAAGCTTGTTCGCCAGTCCAAGTGTTTGCAAGACAAAATGACTGCAAAGGAGAGTGCTACGTGGTTGGCTATTGTAAATCAGGAAGAAGCTTTGGCTAGGAAATTGTATCCTGATAAATGCCCACCTGTGTCGATTTGCGGGAGCGGATCTCTTTTGATCAGCGACACTAGTGATTATGATGTCGAAGGAGTTGAAGATGAACCAAATGTCGAAGCAGAGGAAAGCAAACCCCATGATCTCAACTTCTTTAATATGGGAGCTCCTGGATCTAGGGAGAGACTTATGATGCCACCTGTCTGTCCTCAGATTAAGGAAGAATTTATGGAAAACAATTCTGACTTCAATCAGAAGAGGAAGCAGATGACGGATGAATCAAATACGATAATGAACCCAAAGATGTATACTTGTGAGTATTCTCAATGCCCTTATAACAGTGCTCGTCTCGGGTTTCTTGACAGGAATTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCATATATTTAGCATGCCAAGCTTTCAATCTAACGAAGACAAATCGGCATCTCCCATTCCTCCATCCTTCAACCATCCTAAGGCACCTGCTCGGCTGATGAACCCGACTCCACCCTTCAGGGTATCAGGACTTGGACTTCCCGAAGATGGCCAGAAAATGATTTCTGACCTCTTGAGTTTCTATGATTCTAACCTCCAACAGGACAAACATTTGAATTCGGGTAATCTTGACATGCAAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGACGATAATTTGTATTGTCAAGCCACAATGGTGGGAAATACTATGCCAATTCAGCAGCACCCTGATTTTTCTTCCAACAAACATCCATTTGACGAATACAAGGCAGCGTTCGATTCTCCATTTGGCATGTATCCCAACGATAACATCTCCGACTTCAGATTCGGTTCTCCATTTAACTTGGCATCAATCGATTATGCAGCAGCAGACACACAATTGCCCAAACAAGATACACCCTTGTGGTACCTTTGA 1848 45.24 MNTMGIFEDISFCRNLEYFSAPPGEQETAQEHEAEAVLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGADSSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMPPVCPQIKEEFMENNSDFNQKRKQMTDESNTIMNPKMYTCEYSQCPYNSARLGFLDRNSRNNHQLNCPFRSDSSHIFSMPSFQSNEDKSASPIPPSFNHPKAPARLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKHLNSGNLDMQDDHNQQQQLPKFQLQVDDNLYCQATMVGNTMPIQQHPDFSSNKHPFDEYKAAFDSPFGMYPNDNISDFRFGSPFNLASIDYAAADTQLPKQDTPLWYL 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20497648 20501352 - MELO3C019931.2.1 Cme03g01109 323120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01109 615 Pfam Ethylene insensitive 3 50 297 IPR006957 GO:0005634
Cme03g01109 615 MobiDBLite consensus disorder prediction 21 45 - -
Cme03g01109 615 Gene3D - 174 307 IPR023278 GO:0003700|GO:0005634
Cme03g01109 615 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 4 614 IPR006957 GO:0005634
Cme03g01109 615 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 4 614 - -
Cme03g01109 615 Coils Coil 35 69 - -
Cme03g01109 615 Gene3D - 82 162 IPR023278 GO:0003700|GO:0005634
Cme03g01109 615 Coils Coil 372 392 - -
Cme03g01109 615 MobiDBLite consensus disorder prediction 68 93 - -
Cme03g01109 615 MobiDBLite consensus disorder prediction 442 456 - -
Cme03g01109 615 MobiDBLite consensus disorder prediction 442 472 - -
Cme03g01109 615 SUPERFAMILY DNA-binding domain of EIN3-like 176 300 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01109 K14514 EIN3; ethylene-insensitive protein 3 - csv:101214396 1205.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00432 Cme-Chr2:3580854 Cme03g01109 Cme-Chr3:20497648 0 dispersed
Cme02g00518 Cme-Chr2:5334893 Cme03g01109 Cme-Chr3:20497648 6.73E-134 dispersed
Cme03g01109 Cme-Chr3:20497648 Cme07g01755 Cme-Chr7:23062323 1.76E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g853 . . . . . . . . . . . . . . . . . Bhi04g01650 . . . . . Lcy10g1635 . . . . . . . . . . . Lsi08g00615 Csa06g00461 . . . . . . . . . . . Cmo04g02607 . Cma04g02492 . Car04g02399 . . Cpe01g02155 . . . . . . . Cla08g00868 Cam08g1308 Cec08g0891 Cco08g1004 Clacu08g1013 . Cre08g0804 . . . Cme03g01109
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00432 . 2 624 EIL Transcription Factor Family AT2G27050 58.7 6.1e-192 667.5
Cme03g01109 . 2 506 EIL Transcription Factor Family AT2G27050 62.2 8.6e-170 594.0
Cme02g00518 . 44 292 EIL Transcription Factor Family AT2G27050 68.3 1.4e-95 347.4
Cme02g00518 . 44 578 EIL Transcription Factor Family AT1G73730 54.9 2.5e-147 519.2
Cme02g00432 . 36 334 EIL Transcription Factor Family AT1G73730 61.9 4.6e-104 375.6
Cme03g01109 . 37 334 EIL Transcription Factor Family AT1G73730 61.9 7.8e-104 374.8
Cme02g00432 . 3 624 EIL Transcription Factor Family AT3G20770 61.7 6.5e-208 720.7
Cme03g01109 . 6 504 EIL Transcription Factor Family AT3G20770 63.4 2.6e-172 602.4
Cme02g00518 . 44 292 EIL Transcription Factor Family AT3G20770 69.7 1.5e-98 357.5
Cme02g00518 . 83 288 EIL Transcription Factor Family AT5G65100 58.7 1.6e-69 260.8
Cme07g01755 . 23 323 EIL Transcription Factor Family AT5G10120 50.6 4.0e-77 285.8
Cme02g00518 . 44 290 EIL Transcription Factor Family AT5G10120 54.8 8.7e-72 268.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41017 PF04873 EIN3 3.10E-132 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01109 Cme_Chr03 FPKM 0.510638 0.570181 0.0 0.0 9.287511 9.935684 7.790105 0.0 0.0 0.0