Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01118 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAGTTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGTCTCACACTGGATGAGGTCCAAAATCAGTTGGGTGATCTAGGAAAGCCATTAATAAGCATGAACCTTGATGAGCTTCTTAAAAATGTATGGACTGCTGAGGCCAACCAAACTGTTGGCAAGGACAATGAGGACAATAATATCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACCGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGACAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCGGGGGTGGTTGCTGAGACATCGTCAAATAAAAAAGGTGCGGGCCCTGTTGTTGAAATTGACGCAAATATCACACCCCAGTTCCAACAAACGCAGTGGATGCAATACACTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTCTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCTGTGATGGATGTCCCATATGTAGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGGCATCCGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACCGTTGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCTGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAGCTGGAGAATAAAGTTTCGCGTTTGGAAGAGGAGAACGAAAGGCTCAGGAAACGAAAGGAGTTTCTCTTACATGTAGGAGCTGGAAAAGATGCTACCGTTAGCTCCCTCACCTGA 942 46.5 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNILANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMQYTQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQASGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKEFLLHVGAGKDATVSSLT 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20638336 20644341 - MELO3C019925.2.1 Cme03g01118 323129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01118 313 SMART brlzneu 247 311 IPR004827 GO:0003700|GO:0006355
Cme03g01118 313 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 298 IPR004827 GO:0003700|GO:0006355
Cme03g01118 313 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 296 IPR043452 GO:0003700|GO:0045893
Cme03g01118 313 Gene3D - 249 301 - -
Cme03g01118 313 SUPERFAMILY Leucine zipper domain 251 299 IPR046347 GO:0003700|GO:0006355
Cme03g01118 313 MobiDBLite consensus disorder prediction 1 21 - -
Cme03g01118 313 Pfam bZIP transcription factor 251 296 IPR004827 GO:0003700|GO:0006355
Cme03g01118 313 CDD bZIP_plant_BZIP46 251 299 - -
Cme03g01118 313 PANTHER BZIP TRANSCRIPTION FACTOR 4 296 - -
Cme03g01118 313 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Cme03g01118 313 Coils Coil 267 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00398 Cme-Chr2:3265126 Cme03g01118 Cme-Chr3:20638336 1.99E-73 dispersed
Cme03g01118 Cme-Chr3:20638336 Cme03g02053 Cme-Chr3:28020718 3.80E-16 dispersed
Cme03g01118 Cme-Chr3:20638336 Cme01g00057 Cme-Chr1:439098 1.24E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41018 PF00170 bZIP_1 3.90E-13 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01118 K14432 - csv:101213915 533.102