Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01122 ATGGCGTCAGAGCGGCCGCTACTGATTATATCTCCAAGAACACCGAAAACTGTCTCTCACGATCTACAGAAACCGGAGTTGAATCGACCTGGATTGGTCTTCGCCATGGATTCTCGAAGCCCAAATGAGAATTCAGCGAGTACCGAACTGGGTTATCGGTCTTTCTCACGGCGAAGTCAATCGTCGCTGCAATCGAAGTCGTCAATTCGTGAAGTGGGTTCTAGTGAATTTGGACCGAGGCCTGTTCGTCATGGGTCTCGAGGTGCTGATTCTGAAGCATTCAGCATATCCCAGAAGGAGATCAGTGATGAAGATGCGAGGTTAATTTATATTGACGATCCCGAAAAGTCGAACGAGAAGTTCGAATTTGCTAGAAATTCGATTCGCACCGGCAAGTATTCGATTCTCACTTTTCTGCCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTCAATCAACTTCCCCAGCTTGCTGTTTTTGGTCGGGGAGTTTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCTGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGACAAAATTGAGAACAATAGATTAGCTTCTGTTTTGGTAGACGGTCAGTTTCAACTGAAGAAATGGAAGAATATTAGAGTTGGTGAGATAATTAAGATTGGTGCCAATGATACCATTCCTTGTGATATGGTGCTTCTTTCTACCAGTGATTCCACAGGGGTTGCATATGTTCAAACTCTGAATTTGGATGGGGAATCAAATTTGAAAACCAGGTATGCCAAACAGGAAACAATGTCAAAAATGCCCGACAAAGAGAAGATTGTAGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGTGAGCTTAAGAATACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGTGAGACAAAAGCCATGCTTAACAGTTCTGGAGCTCCATCAAAAAGAAGTCGACTTGAGACTCGTATGAATGTGGAGATTGTTATGCTCTCTTTCTTTCTCGTTGCCTTGTGTACTGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATCAGAAACAGGGAAAATTTGGACATTTTACCTTATTTCAGAAATAAGGACTTCTCAAAGGACCCACCTGAAACTTATAATTACTATGGATGGGGATTGGAGGCTTTTTTTGCGTTCCTCATGTCAGTCATTGTGTTCCAGGTCATGATCCCCATTTCACTATACATTTCCATGGAGGTTGTTCGTATTGGTCAGGCTTATTTCATGATCCGAGACACCCAAATGTACGACGAAACATCAAATTCGAGATTTCAATGTCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCGGACAAAACAGGTACTCTTACCGAGAATAAGATGGAATTTCGATGTGCAAGCATCTGGGGAGTTGATTATGGAGGTGAAAGTTCCATTCCTCTCGACGAGCAGATTGGATACTCTGTTCGAGTGAATGGAAAGGTTTTGAGACCAAAATTGGTTGTCAAAACTGATCCCGAGCTTCTACAGTTGTCAAGAAGTGGAAGGCACACCAGGGATGGAAGATATATTCATGATTTCTTCCTTGCATTAGCTGCTTGCAATACCATTGTTCCTCTCATTACCGAAACTTCTGACCCTTCGGTGCAATTAATTGACTACCAAGGGGAATCTCCAGATGAACAGGCATTGGTTTATGCTGCTGCAGCATATGGTTTTATGCTAATTGAACGAACTTCTGGCCATATAGTTATTGACATACATGGTGAAAAACATAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGCGGATGTCGGTTATATTGGGGTGTCCTGATACGACATTTAAAGTGTTTGTAAAAGGTGCTGATAACTCCATGTTCAAGGTGATGGGTGAAAATATGAACACAGATATCATTCAATCAACTAAAGCTCATCTTTATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGAATGAAAGAACTCAGTTCCACCGATTTTGATAAATGGCACATGATGTTTGAGGAAGCAAGTACTGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAGCATTGAGAACAATTTGTTCATATTAGGTGCCTCGGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGGACGGCGGGAATTAAAGTATGGGTTTTGACTGGTGACAAGCAAGAAACTGCCATTTCAATAGGTTACTCCTCAAAGCTTTTGACAAACAAGATGACTCAAATTATAATTAACAGCAATTCGGCAGAATCATGCAAAAGGAAATTAGAAGATGCAATAATCATGTCAAAGACTGCTTCAGGCGTTTCACTGGATAATGAAAGAAGCACTGAAGTTGCAACGACTTCGATTGCGTTGATCATTGATGGTAGTAGCCTCGTTCATATTCTTGACAGTAAACTCGAAGAACAGCTTTTCCAACTATCTTGCAACTGTTCGGTGGTGTTATGTTGTCGAGTTGCCCCGTTGCAAAAAGCTGGAATTGTTGCCCTTGTGAAGAAAAGGACCTCTGACATGACACTTGCCATTGGTGACGGCGCGAACGACGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGAATCAGTGGTCTAGAGGGTCGACAAGCTGTTATGGCATCAGATTTTGCCATGGGACAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGGCATTGGAATTACCAGCGGATGGGCTACATGATCTTGTATGTGCTATTTACCGGTTACTCGTTGACAACGGCGATCAACCAATGGAGCAGTGTGCTCTACTCTATAATCTATACTTGTTTGCCCACTATTATTGTTGGAATTCTTGACAAGGACTTGGGTAGAAGGACTCTTCTTAGTTACCCTCAACTCTATGGGGCTGGCCACAGACAGGAAAGCTACAACTCTAGATTGTTTTGGTTAACTATTATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTTATCCCCCTCTTCGCATTTTGGGCTACCACCGTCGACATTTCAGGCCTTGGAGATCTCTGGCTACTTGCCACAGTCATCGTTGTCAACTTACATTTATCAATGGACGTCGTTCGATGGTATACCGTCACCCATGCTGTGATCTGGGGATCCACTCTCGCAACTTTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCCGCATTACTTCCTCGTTTTGTCGTAAAATACATTTATCAATATTACTGTCCATGTGACATCCAAATAGCAAGGGAGGCTGATAAGTTTGGGCTTACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATCCCAGTCCTCAACAACTCTTTACAAGTATGA 3519 42.09 MASERPLLIISPRTPKTVSHDLQKPELNRPGLVFAMDSRSPNENSASTELGYRSFSRRSQSSLQSKSSIREVGSSEFGPRPVRHGSRGADSEAFSISQKEISDEDARLIYIDDPEKSNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFQLKKWKNIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIVMLSFFLVALCTVVCVLAAVWFIRNRENLDILPYFRNKDFSKDPPETYNYYGWGLEAFFAFLMSVIVFQVMIPISLYISMEVVRIGQAYFMIRDTQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGVDYGGESSIPLDEQIGYSVRVNGKVLRPKLVVKTDPELLQLSRSGRHTRDGRYIHDFFLALAACNTIVPLITETSDPSVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKHRYNVLGMHEFDSDRKRMSVILGCPDTTFKVFVKGADNSMFKVMGENMNTDIIQSTKAHLYSYSSKGLRTLVIGMKELSSTDFDKWHMMFEEASTALIGRAAKLRKVASSIENNLFILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSAESCKRKLEDAIIMSKTASGVSLDNERSTEVATTSIALIIDGSSLVHILDSKLEEQLFQLSCNCSVVLCCRVAPLQKAGIVALVKKRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIIVGILDKDLGRRTLLSYPQLYGAGHRQESYNSRLFWLTIIDTVWQSIAIFFIPLFAFWATTVDISGLGDLWLLATVIVVNLHLSMDVVRWYTVTHAVIWGSTLATFICVIVLDSILSLPALLPRFVVKYIYQYYCPCDIQIAREADKFGLTRELGVVQTEMIPVLNNSLQV 1172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20705157 20710674 + MELO3C019921.2.1 Cme03g01122 323133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01122 1172 Pfam Cation transport ATPase (P-type) 601 677 - -
Cme03g01122 1172 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1120 1168 - -
Cme03g01122 1172 MobiDBLite consensus disorder prediction 1 94 - -
Cme03g01122 1172 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Cme03g01122 1172 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 123 1118 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cme03g01122 1172 CDD P-type_ATPase_APLT_Dnf-like 125 1054 - -
Cme03g01122 1172 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1120 1168 - -
Cme03g01122 1172 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 766 IPR023299 GO:0000166
Cme03g01122 1172 Pfam Phospholipid-translocating ATPase N-terminal 109 174 IPR032631 -
Cme03g01122 1172 SUPERFAMILY Calcium ATPase, transduction domain A 206 347 IPR008250 -
Cme03g01122 1172 SFLD Haloacid Dehalogenase 477 960 - -
Cme03g01122 1172 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 44 1120 - -
Cme03g01122 1172 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 879 1002 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme03g01122 1172 SUPERFAMILY HAD-like 480 950 IPR036412 -
Cme03g01122 1172 SFLD p-type atpase 477 960 IPR044492 -
Cme03g01122 1172 Pfam E1-E2 ATPase 209 451 - -
Cme03g01122 1172 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 44 1120 - -
Cme03g01122 1172 Gene3D - 180 350 - -
Cme03g01122 1172 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1136 IPR023298 -
Cme03g01122 1172 MobiDBLite consensus disorder prediction 38 72 - -
Cme03g01122 1172 Gene3D - 750 949 IPR023214 -
Cme03g01122 1172 Pfam Phospholipid-translocating P-type ATPase C-terminal 937 1119 IPR032630 -
Cme03g01122 1172 Gene3D - 596 730 IPR023299 GO:0000166
Cme03g01122 1172 PRINTS P-type cation-transporting ATPase superfamily signature 909 928 - -
Cme03g01122 1172 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01122 Cme-Chr3:20705157 Cme08g02098 Cme-Chr8:26574399 0 dispersed
Cme03g01122 Cme-Chr3:20705157 Cme10g00310 Cme-Chr10:2035551 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01122 K14802 - csv:101212953 2223.36