Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01177 ATGGCAGCGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATGTTCCTGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTTGAATGGACCAAGATTGAGCCTGTTACGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTGCTCGAGGCTGAACAAGTGATTGCTGAGGGCTACGGTGTTGTTCTTGTGAATACTGATGAGGCTGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAAGCATGGATGTTATTTCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAATTGTTGTGAAGTCAAATGCCATCTCTCGCCAATCTGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTCCGTCCAAGAACAAAACAGAGGCGTAATGTATATGATGCATTATCGAGGTGTATGAAACCGGCAAGAATATGGGATCTATATGCATTCCAGTGCGGGCCTTCCAAGTACAGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACATGCATCAATGAGCATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAAAATCAATTCCAGTTATACCCTGTGTCAGACTTATCCATTTGCATTGGTTGTTCCTAAACACTTTAGTGATGAAGAGATGTTGCAGGCTTCTACCTTCCGTGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGGACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCGCTTTGCTCGAATCTTGCTGGTGTTCGAGGGTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCGTCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTAAGAGAGTACTTGGATACACATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCTGCTTCTGTATCAACTCTGGGAGATAGCGGTTGGCTAATCCATGTTCAAAGCGTCCTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAAAGCAACGGTGTTAGTTCATTGCAGTGATGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACATTTGTTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGATCTGGCATGCCAACCATATCGGGAAGTGGTAACATGCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTTTTTCTTCTTCACCTATGCGTCAGTCATCTGGAGCATTCATATCTCAAGCTTCCAGTCCTCATGCACAAACATCCAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTTGTGGATCTGTTGGATTGTATGCTTTCCTGTCGTTTTGGGAACTTCTTATGCAATTGTGAGAAGGAACGTCAGCAATGTGCTGTTTCTGAAGTTTGCGGCTGTCTATGGGCATATTTAGCGGATTTACGAGCCTCAGAAGGAGGTTCACATGTGCATTATAACCTTTTCTATGATCCAACGATTCCTACCAAACATGATGGTGCTCTCTTACCTCCTGCGGCAGCTCTAGCTCCCACTCTCTGGCCACAATTCCATCTTCGTTGGGCTTGCCCAAAAGAATCCCAAGCAGGGGAACTTGAAGTCAGATGCAGGAAAATGGCTATACAATTATCTGAAATGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAGGAGGTGACGGCTGCCATGGAATCATTAAAATTGGAGTTGCAAAACGAGAAACAGTTAAGTATATCAGCTAGGAATGTTGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGCTATTGTACTGTTGACATTGATGGCGACCTGATGAAAAAATCCAACCAGAAAAGTCATCCTGCTTCAAGAAGAACTTCACATCGTTCACTGCCATCCGCTAGTGAAGAGAATGATCTCTCCCTTTCTATAACAGTTACAGCAGATGATGTGCCAAGTAACCCCCTCAGTCACATCTGTGAAGCTCTTTGCCCATTACGCACTCGGGATGGAGGGTGCCGGTGGCCTGATGCTGGCTGTGCTCACTTGGGTAGCCAATTTATTGGAATGAAGGCAAATTTCGAAGCATTCGATCAACTATCCATATATGATGGTTATTTCAAGCCAGAGTGA 2580 43.91 MAAPKPRTTRSRSHRDVPDLEKMDAAYSWDALEWTKIEPVTRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGSMDVISLGTIPLATIDKFNKIVVKSNAISRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRNVYDALSRCMKPARIWDLYAFQCGPSKYSNTDPKVRLLNEYFRLLGKGSLHASMSMIEDGSFTLSNELWRITKINSSYTLCQTYPFALVVPKHFSDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGVRGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFVGFQALVEKDWLAFGHPFSDRSGMPTISGSGNMPYELSRQSSTGSFSSSPMRQSSGAFISQASSPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGGSHVHYNLFYDPTIPTKHDGALLPPAAALAPTLWPQFHLRWACPKESQAGELEVRCRKMAIQLSEMQKDKEIAERKAQEVTAAMESLKLELQNEKQLSISARNVAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIDGDLMKKSNQKSHPASRRTSHRSLPSASEENDLSLSITVTADDVPSNPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGMKANFEAFDQLSIYDGYFKPE 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21230981 21251042 + MELO3C019875.2.1 Cme03g01177 323188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01177 859 CDD PTP-MTM-like 262 555 - -
Cme03g01177 859 PANTHER MYOTUBULARIN-RELATED 19 858 IPR030564 -
Cme03g01177 859 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 660 IPR029021 -
Cme03g01177 859 Coils Coil 674 715 - -
Cme03g01177 859 SUPERFAMILY PH domain-like 51 176 - -
Cme03g01177 859 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 858 - -
Cme03g01177 859 MobiDBLite consensus disorder prediction 763 787 - -
Cme03g01177 859 Gene3D - 63 163 IPR011993 -
Cme03g01177 859 SMART gram2001c 43 111 IPR004182 -
Cme03g01177 859 ProSiteProfiles Myotubularin phosphatase domain. 199 656 IPR010569 -
Cme03g01177 859 Pfam Myotubularin-like phosphatase domain 172 595 IPR010569 -
Cme03g01177 859 ProSitePatterns Tyrosine specific protein phosphatases active site. 442 452 IPR016130 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01177 K18081 MTMR1_2; myotubularin-related protein 1/2 [EC:3.1.3.64 3.1.3.95] - csv:101204839 1686.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g616 . Blo13g00941 . . . . . Bma08g01169 . . . . . . . Cpe13g00776 . Bhi04g01282 . . . Hepe02g2902 . Lcy10g1700 . . . . . . . . . Cone11ag1023 Cone18ag0555 Lsi08g00665 . . . . . . Bda15g00402 . . . . . . Cmo15g00495 . Cma15g00486 . Car15g00447 . . . . . . . . . Cla08g00816 Cam08g1250 Cec08g0835 Cco08g0946 Clacu08g0953 . Cre08g0754 . . Chy03g00887 Cme03g01177
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme03g01177 Cme_Chr03 FPKM 45.041553 47.754272 43.488892 44.978233 73.892166 69.695671 73.757912 61.666054 62.123959 60.147442