Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01177 ATGGCAGCGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATGTTCCTGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTTGAATGGACCAAGATTGAGCCTGTTACGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTGCTCGAGGCTGAACAAGTGATTGCTGAGGGCTACGGTGTTGTTCTTGTGAATACTGATGAGGCTGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAAGCATGGATGTTATTTCCCTTGGCACTATACCACTGGCGACAATTGATAAATTCAACAAAATTGTTGTGAAGTCAAATGCCATCTCTCGCCAATCTGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTCCGTCCAAGAACAAAACAGAGGCGTAATGTATATGATGCATTATCGAGGTGTATGAAACCGGCAAGAATATGGGATCTATATGCATTCCAGTGCGGGCCTTCCAAGTACAGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACATGCATCAATGAGCATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAAAATCAATTCCAGTTATACCCTGTGTCAGACTTATCCATTTGCATTGGTTGTTCCTAAACACTTTAGTGATGAAGAGATGTTGCAGGCTTCTACCTTCCGTGCTAGATGTCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGGACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCGCTTTGCTCGAATCTTGCTGGTGTTCGAGGGTCATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCGTCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTAAGAGAGTACTTGGATACACATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCTGCTTCTGTATCAACTCTGGGAGATAGCGGTTGGCTAATCCATGTTCAAAGCGTCCTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAAAGCAACGGTGTTAGTTCATTGCAGTGATGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACATTTGTTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGATCTGGCATGCCAACCATATCGGGAAGTGGTAACATGCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTTTTTCTTCTTCACCTATGCGTCAGTCATCTGGAGCATTCATATCTCAAGCTTCCAGTCCTCATGCACAAACATCCAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTCTCTTCAGCATTCCTTGTGGATCTGTTGGATTGTATGCTTTCCTGTCGTTTTGGGAACTTCTTATGCAATTGTGAGAAGGAACGTCAGCAATGTGCTGTTTCTGAAGTTTGCGGCTGTCTATGGGCATATTTAGCGGATTTACGAGCCTCAGAAGGAGGTTCACATGTGCATTATAACCTTTTCTATGATCCAACGATTCCTACCAAACATGATGGTGCTCTCTTACCTCCTGCGGCAGCTCTAGCTCCCACTCTCTGGCCACAATTCCATCTTCGTTGGGCTTGCCCAAAAGAATCCCAAGCAGGGGAACTTGAAGTCAGATGCAGGAAAATGGCTATACAATTATCTGAAATGCAGAAGGACAAAGAAATAGCCGAGAGAAAAGCCCAGGAGGTGACGGCTGCCATGGAATCATTAAAATTGGAGTTGCAAAACGAGAAACAGTTAAGTATATCAGCTAGGAATGTTGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAGTCTCTAGGTTGCAAGGTTCAAGTCTCTAGTAATGGCTATTGTACTGTTGACATTGATGGCGACCTGATGAAAAAATCCAACCAGAAAAGTCATCCTGCTTCAAGAAGAACTTCACATCGTTCACTGCCATCCGCTAGTGAAGAGAATGATCTCTCCCTTTCTATAACAGTTACAGCAGATGATGTGCCAAGTAACCCCCTCAGTCACATCTGTGAAGCTCTTTGCCCATTACGCACTCGGGATGGAGGGTGCCGGTGGCCTGATGCTGGCTGTGCTCACTTGGGTAGCCAATTTATTGGAATGAAGGCAAATTTCGAAGCATTCGATCAACTATCCATATATGATGGTTATTTCAAGCCAGAGTGA 2580 43.91 MAAPKPRTTRSRSHRDVPDLEKMDAAYSWDALEWTKIEPVTRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGSMDVISLGTIPLATIDKFNKIVVKSNAISRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRNVYDALSRCMKPARIWDLYAFQCGPSKYSNTDPKVRLLNEYFRLLGKGSLHASMSMIEDGSFTLSNELWRITKINSSYTLCQTYPFALVVPKHFSDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGVRGSSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEKATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFVGFQALVEKDWLAFGHPFSDRSGMPTISGSGNMPYELSRQSSTGSFSSSPMRQSSGAFISQASSPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGGSHVHYNLFYDPTIPTKHDGALLPPAAALAPTLWPQFHLRWACPKESQAGELEVRCRKMAIQLSEMQKDKEIAERKAQEVTAAMESLKLELQNEKQLSISARNVAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIDGDLMKKSNQKSHPASRRTSHRSLPSASEENDLSLSITVTADDVPSNPLSHICEALCPLRTRDGGCRWPDAGCAHLGSQFIGMKANFEAFDQLSIYDGYFKPE 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21230981 21251042 + MELO3C019875.2.1 Cme03g01177 323188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01177 859 CDD PTP-MTM-like 262 555 - -
Cme03g01177 859 PANTHER MYOTUBULARIN-RELATED 19 858 IPR030564 -
Cme03g01177 859 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 660 IPR029021 -
Cme03g01177 859 Coils Coil 674 715 - -
Cme03g01177 859 SUPERFAMILY PH domain-like 51 176 - -
Cme03g01177 859 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 19 858 - -
Cme03g01177 859 MobiDBLite consensus disorder prediction 763 787 - -
Cme03g01177 859 Gene3D - 63 163 IPR011993 -
Cme03g01177 859 SMART gram2001c 43 111 IPR004182 -
Cme03g01177 859 ProSiteProfiles Myotubularin phosphatase domain. 199 656 IPR010569 -
Cme03g01177 859 Pfam Myotubularin-like phosphatase domain 172 595 IPR010569 -
Cme03g01177 859 ProSitePatterns Tyrosine specific protein phosphatases active site. 442 452 IPR016130 GO:0016311|GO:0016791
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01177 K18081 - csv:101204839 1686.77