Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme03g01236 ATGTTTGCTACTACTGGGGTTCTTTTCTTCATCTGGTTTTTAAGCTGCACTCTGCTTCCTCTTACCATGGCAACTTTCAACTTCAATCTCACTGTGCAAAATCTTCTACCAGATCCTGAGACTGTTGCTTATCAAGTTCAAAGGAGTGTGAACGATTCCTTTTTCAGAAGACAAATGCTGTCCGTTCATTCAAAAGGGCAATCCAGTTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGTTGTGACTCAAACTGGCAAGCTAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGCCGAGATGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATCCCGACCCTGTAAACCCTCGACCTGGAACTCTCCGTTACGCTGTGGTTCAAGATGAACCTCTATGGATCGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGAGGCGCCAATGTCCACATTACCGGCGGCGGTTGCATCACACTCCAATACATCTCGAATGTAATCATCCACAACATCAACATCCACCACTGTGTCCCTACCGGCCACACCAACATCCGATCGTCCCCTACGCATGTCGGATACAGAGGAAAGTCCGACGGCGATGGAATCTCGATCTTTAGCTCACGAAACATCTGGATCGACCATTGTTCTCTCTCGTACTGTACCGATGGCTTAATCGACGCCATAATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGTTGTTAGGGCATGACGATGGGTTCACGCCGGACTCAGGGATGCAGGTGACAATTGCGTTTAATTTGTTCGGGGAGAAGCTGGTTCAGAGGATGCCGCGGTGCCGACGGGGATACATTCACGTTGTAAACAACGATTTCCGATCGTGGGAGATGTACGCCATCGGCGGGAGTGGTAATCCGACAATCAACAGCCAAGGGAATCGGTATATTGCTCCTGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACGAACGCGGGAGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGTGGCTCCAGGGAGACTAGACAGAGCAGTTCGTACCCAGGAGACGAAACCTCCTCCAGCTCAGGATCCAGTGGCAGCGATGGTGGTGGTGACTATTTTGGGATGATATTCGGCGGGGGCGGGATAAACAATGCACCACCACCATCTCTTTCGGCTGTTAACATGGTCATTCTAACTCTATTTACTGTCTTAATTCTGTACACAAACAACTACGATGCCTTATTATTAACATTGTCATTGTAG 1488 49.87 MFATTGVLFFIWFLSCTLLPLTMATFNFNLTVQNLLPDPETVAYQVQRSVNDSFFRRQMLSVHSKGQSSSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDPDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCVPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRETRQSSSYPGDETSSSSGSSGSDGGGDYFGMIFGGGGINNAPPPSLSAVNMVILTLFTVLILYTNNYDALLLTLSL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21945807 21949996 + MELO3C019840.2.1 Cme03g01236 323247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme03g01236 495 SMART amb_all 149 346 IPR002022 -
Cme03g01236 495 Pfam Pectate lyase 157 338 IPR002022 -
Cme03g01236 495 MobiDBLite consensus disorder prediction 417 442 - -
Cme03g01236 495 SUPERFAMILY Pectin lyase-like 69 413 IPR011050 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cme03g01236 495 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cme03g01236 495 PANTHER PECTATE LYASE 18-RELATED 5 434 IPR045032 GO:0030570
Cme03g01236 495 PANTHER PECTATE LYASE 5 434 - -
Cme03g01236 495 Gene3D - 74 416 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01236 Cme-Chr3:21945807 Cme06g00410 Cme-Chr6:2629054 0 dispersed
Cme08g01275 Cme-Chr8:9216899 Cme03g01236 Cme-Chr3:21945807 0 transposed
Cme10g00106 Cme-Chr10:731398 Cme03g01236 Cme-Chr3:21945807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme03g01236 K01728 - csv:101207535 924.85